RNA id: TU1337494


Basic Information

Item Value
RNA id TU1337494
length 301
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1172816
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 39185796 ~ 39186096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACACctttgggagagaggagagagaaagaaagaaagagggagagaaaggagacagaCTGCTAgtgatgggggaggggagagaagagaaggagagtcaTGAGACAGGAAATGTAAGCGTGAGATGTATCCTTTTTTTCAGACTGTTAATTGCGGAACACTGGGAACAGAAGGACTAACATTCAAATTTAATTGCCCTTTCTAGGGGGGGAATGTTACATTGTTACTGAGGGTGTATGGTTATAGAAGTACAAATCTGTATTTTATAATACTGCAGATatatttatgtgttatttctgaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1337492 lncRNA downstream 1944 39182709 ~ 39183852 (-) True LOC110486310
TU1337489 lncRNA downstream 11273 39174308 ~ 39174523 (-) True G1172811
TU1337467 lncRNA downstream 13597 39171951 ~ 39172199 (-) False LOC110486310
TU1337303 lncRNA downstream 54581 39130975 ~ 39131215 (-) True G1172658
TU1337296 lncRNA downstream 58969 39126520 ~ 39126827 (-) True G1172651
TU1337507 lncRNA upstream 92425 39278521 ~ 39279864 (-) True G1172823
TU1337598 lncRNA upstream 179766 39365862 ~ 39366086 (-) True G1172905
TU1337603 lncRNA upstream 183162 39369258 ~ 39369479 (-) True G1172910
TU1337606 lncRNA upstream 184291 39370387 ~ 39370652 (-) True G1172913
TU1337618 lncRNA upstream 188048 39374144 ~ 39375370 (-) True G1172924
XM_036941022.1 mRNA downstream 2801 39136920 ~ 39182995 (-) False LOC110486310
XM_036941023.1 mRNA downstream 3878 39136920 ~ 39181918 (-) False LOC110486310
XM_036941024.1 mRNA downstream 3915 39136920 ~ 39181881 (-) False LOC110486310
XM_036941026.1 mRNA downstream 20527 39136920 ~ 39165269 (-) False LOC110486310
XM_036941021.1 mRNA downstream 20528 39136920 ~ 39165268 (-) False LOC110486310
XM_021557808.2 mRNA upstream 33983 39220079 ~ 39223322 (-) True LOC110486311
XM_021557815.2 mRNA upstream 62054 39248150 ~ 39250295 (-) False LOC110486313
XR_002468056.2 mRNA upstream 67934 39254030 ~ 39254795 (-) True LOC110486314
XM_021557820.2 mRNA upstream 69723 39255819 ~ 39275546 (-) False LOC110486315
XM_021557819.2 mRNA upstream 69723 39255819 ~ 39275562 (-) False LOC110486315
TU1337466 other downstream 4602 39180774 ~ 39181194 (-) False LOC110486310
TU1335834 other downstream 1987156 37198228 ~ 37198640 (-) True G1171337
TU1335637 other downstream 2301456 36884018 ~ 36884340 (-) True G1171149
TU1335522 other downstream 2357371 36819594 ~ 36828425 (-) False G1171057
TU1337500 other upstream 62056 39248152 ~ 39250093 (-) False LOC110486313
TU1337501 other upstream 62056 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other upstream 62056 39248152 ~ 39250310 (-) True LOC110486313
TU1337573 other upstream 142120 39328216 ~ 39331239 (-) True LOC110486318
TU1338408 other upstream 737826 39923922 ~ 39924959 (-) True G1173645

Expression Profile