RNA id: TCONS_00005893


Basic Information

Item Value
RNA id TCONS_00005893
length 2384
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id XLOC_002131
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23588675 ~ 23591058 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tggttttttaacccaaatgctgggttgagactgctgggtaacaaaattgggttgattcaacccaatttgggttgaaaaTCGATCTTTATCTATAACCCAGCAGTGCTGGGTTGGGAACGCGGACGTGAAAGAGAGCACGCACGTCACGTCAACATGCAGGGACATCAACGTGAGAAACCACCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTGTGTGAGACGTAAGTTATTTAgtgtgtatttaacaattttcataagaaataacacacttagtttacttagtataatatacacacgcttttttttctgtttcttcgCCTGATGGCCGACTTGTTGCTCCGCCTCACGCAGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacctgtttctccggacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACGCCTGACCTGTGCTCGCCTCACGCCCGACCTGTTGCTCCGCCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGACCACTTTATAATCACAACACCTAGGATAATTTAGgagctttttattgtaataaaatgccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgtTACTGTGATCTTTCTGGGGTGTTAACTGTAAAGCAGTAAGTAGTATTTTTACTCTTGTATTTCTTAAGTTTGTTCATGGATTTTTGTGACAATACATTGATGCATAAGTGTTGAATTCAGcttctaacaatgttttttttttatcaaaatatatacaataattgtcctgctctgcatgtacattttgtttagctgtacatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagACGTGATTTGAGATATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGGCTAATTCCAACCTAATCATCTtcgactgcaaaaagaaaaagtttgaccACCGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtgacttttggctaacatgatctttttttacttaattttgcttaaacgcttttatctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaaggtatgtaataatattttacttggttcattgtaatcattagggctgcccttgtctaaacatttgtctggttgacttgtgatgttcatttgaagcattagttgaataattacagatttattaataaaccatttattcattaattcattttctttttgactcagtccatttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatattttttacacagcggattcatgcagcatacattgactttgccagtgtggactttttttctgcaactagtgggtagcacattcgcctcatagcaacaaggtcacttgatcgatccttggctgggtcaataggcctttctgtgtggagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgccccggtttccaaagacgtggtaaaggtgaattaagtagactaaattgtcaatggtgtatgtgtgtgaatgagtatttgtttcccagtgatgggttgcagctgaaagggcattcgctgcataaaacttatgctggatatgttggtggttcattccattgtggttaccccagattaataaagcgacaaagctaaaaagaaaatgaatgaatgaataaaaaatcttTAGTTGACTAATGGTTATTCAATTATTAGGGGGCAGCCCTAGTAATCATTAGCCACTTCAACACTTTAAACTGAGAGATTAAACTCTAATGCCAATTTGTTTTTGtctggttattttttaaaatctgctgttcatgcaaccagtgacattctcttgttttatttttagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGGTAAGGATTCAATTAAAGGTTTCTCGATGcataatgatgcatttaatgcataatgattgtcttagttattttattaacaatgaaaatgttatttttatgtttgttattagggtggcatgggggcgcagtgggtagtgctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005708 lncRNA upstream 44609 23542617 ~ 23544066 (+) True XLOC_002128
TCONS_00005892 lncRNA upstream 372796 23141296 ~ 23215879 (+) True XLOC_002121
TCONS_00004113 lncRNA upstream 549385 23034329 ~ 23039290 (+) True XLOC_002119
TCONS_00005891 lncRNA upstream 623249 22960289 ~ 22965426 (+) True XLOC_002117
TCONS_00004111 lncRNA upstream 632305 22938231 ~ 22956370 (+) False XLOC_002116
TCONS_00005894 lncRNA downstream 392249 23983307 ~ 23992917 (+) False XLOC_002132
TCONS_00005709 lncRNA downstream 399575 23990633 ~ 23992917 (+) False XLOC_002132
TCONS_00005710 lncRNA downstream 505181 24096239 ~ 24096470 (+) True XLOC_002134
TCONS_00005711 lncRNA downstream 505997 24097055 ~ 24097310 (+) True XLOC_002135
TCONS_00004129 lncRNA downstream 725795 24316853 ~ 24375160 (+) True XLOC_002136
TCONS_00004124 mRNA upstream 29131 23553533 ~ 23559544 (+) True XLOC_002130
TCONS_00004123 mRNA upstream 37719 23548674 ~ 23550956 (+) True XLOC_002129
TCONS_00004122 mRNA upstream 46787 23537576 ~ 23541888 (+) True XLOC_002127
TCONS_00004121 mRNA upstream 65360 23520952 ~ 23523315 (+) True XLOC_002126
TCONS_00004120 mRNA upstream 68777 23511816 ~ 23519898 (+) True XLOC_002125
TCONS_00004127 mRNA downstream 457605 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004126 mRNA downstream 457605 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004128 mRNA downstream 457825 24048883 ~ 24296589 (+) True XLOC_002133
TCONS_00004132 mRNA downstream 830959 24422017 ~ 24435893 (+) False XLOC_002140
TCONS_00004133 mRNA downstream 830959 24422017 ~ 24442546 (+) False XLOC_002140
TCONS_00004117 other upstream 170728 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004107 other upstream 681755 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004103 other upstream 741271 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004086 other upstream 1552428 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004078 other upstream 1608010 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004125 other downstream 401323 23992381 ~ 23992699 (+) True XLOC_002132
TCONS_00004130 other downstream 762692 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004134 other downstream 831173 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004135 other downstream 835871 24426929 ~ 24435439 (+) False XLOC_002140
TCONS_00004147 other downstream 1069084 24660142 ~ 24664449 (+) False XLOC_002143

Expression Profile

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