RNA id: TCONS_00042772



Basic Information


Item Value
RNA id TCONS_00042772
length 2260
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_021531
representative True

Chromosome Information


Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 13814978 ~ 13822642 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ACTTGTTCCATAAATACCATCCCCTCAGTTGAATGGAGGTTATTTTAGATCGTACATGTGGCGTAAGGCCTTGAGTCCTCCTGCTTGTCTGGAACTAAGTGACACCACACTTTAGAGGCAGTGGCTGTAACTGAGTTCTTGAAAACACAGAAGTGGACATGTCTGAGCGCACTGAACAGGAATCATACACAGACAAAATCGATGAGGATGAGATTCTGGCAGGCCTCTCGGCGGAGGAGCTCAAACAGCTCCAAAGTGAGATGGACGACATCGCTCCTGACGAGAGAGTGCCGGTGGGATTGAGACAGAAAGACGCTTCTCATGAGATGACAGTCCGAGATTGCACTGAGCCTGAATCAGAAGAGGAGATAGATGAGGATGAAATTCTGGCAGGCCTCTCAGCAGAGGAGCTCAAGCAGCTCCAGAGCGAGATGGAAGAAATTGCTCCTGACGAGAGAGTGCCGGTGGGAATGAGACAGAGAGACCAAACTGACAAACCACCCACTGGATCATTTGATCACAGATCGCTGGTGGAATATCTGTACTGGGAGAAAGAGTCCAAACGCATGCTGGAGGAAGAGAGGGTTCCCACAACTCTATTACCCAGTCAGaaaacaaatgaggaGCATGAAGCAAAAAATGAAGACAAAGTTGAAGAGCTGGAACTTGTCTATGAGGAGATTGTGGAGGAGGTTGAAGGGGGACAGGGAGATGCTGTTGTTGATGAAGTGATTGAAGAAGTGATAATGGAAGTTGAGGAAGAGGACAAAGTATGTGACAAGCCTGTCAAAACAGATCTTGATGCTACCGACCCCACAGTGACCTCAGAAGATGGTTTACAGCGCCCTTCAGAGTCTGCAGATGCAAATGTTGAAGCTAAGACTGACCAATCAGGACTTGACACAGAAACTAAAGTAAATGAGGAGAAGAAAGAAGATTCCACTGAACCTGCTCCCTCATCATATGAAAATTGGGTTCCAGAGAAAGAAGAAAGGGTCATATCCAAGCTAAAGATCCCAAAACTTGCTCTAGGTGGCAACACTTTTGTTAAAAAGACTGCAAGGCCTTCTGGGAATGAAACTAATTTGGAGTCCACTCTGGATAAAATTCGCAACAACAATCCCTCTGTCACAGACGTCAATCTAAACAATATTGAAAACATTCCAAAAGAAATGCTCCTTGATTACGTCAACTCCCTGAAGAAGAACCGACATGTTAAGACCTTTAGCATTGCAAACACTGGCGCAGATGAAAATGTAGCATTCACTCTTGCTAACATGCTTAAAGAGAACAGGAGTATCACCACACTAAATATCGAATCCAATTTCATCACAGGAAAAGGAATTGTGGCAATAATACGTTGCCTGCAGTTCAACGAGACATTAACTGAGCTTCGCTTCCACAATCAAAGGCACATGCTAGGACACCATGCAGAAATGGAGGTATCTCGTCTCCTTAAGGCTAACAACACTCTTCTGAAGATGGGTTACCATTTTGAACTCCCTGGGCCCAGAATGGTGGTCACCAATCTCCTCACTAGGAACTTGGATCGTCAACGGCAACAGAGAATGGAGGAGCAGAAGCTCCAGCAAATGAAAGAGCAGAGGAAGGTCATGGAGATGTACGAAGACTCTCTAAACTTGCCCCCTGGCATGTTGGAAATGTTGGGAGGCTACATACCATTGTCCCTCTTGCAGAATTGTCAAAATGGGGCTGAGGATATCCCTGAAGATTCTCCTGAACCTTCACCACAACCAAGTCCACCTCACCAGCTGTGCAAAACCCAACATCTTGCCCCACAACAGCATCCTCCAAATTTAAGTACAGGAAACCTCTTCGAAGAAGTACAGCTGAAAAAGACTCCAAAACGAAGAGATCCACTTCTGGAATGGAACCAATGTGATGAGAGGAAAGATGGAAGACCCAATGTTCATCTAAGGAGCGTTCCTAAAAAAAGGAGCATAGCAAGAGAAGGACCTGTGGATGAAAGAGCAAACCTAAAAGACATGATTAAGACGTTAAAGCCAGTTCCGCGTAGGCGAGAGCCACCAAAGGTGGACTTAACACCCCGGGATCACCTGCTCAGTGAGATTCGACAGAGCAATGTGGCCTATCTCAAAGCAGTACCTCTTCCTAAAATCCTGGAGTCACAGGAAACTAGTCTCTTTTGAGACACACACATAACTTCAAATAGATTGCACAGTGGGACAGGGCCAACGTCAGACAGACCATGGAGAGAATGCGGCTCATGTGGCCAAAC

Function


GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0051694 pointed-end actin filament capping biological_process
GO:0006936 muscle contraction biological_process
GO:0007015 actin filament organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0031430 M band cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005523 tropomyosin binding molecular_function
GO:0003785 actin monomer binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-353 Predicted to enable tropomyosin binding activity. Acts upstream of or within muscle contraction and skeletal muscle thin filament assembly. Predicted to be located in M band. Predicted to be active in striated muscle thin filament. Human ortholog(s) of this gene implicated in nemaline myopathy 10. Orthologous to human LMOD3 (leiomodin 3).

Ensembl:

ensembl_id ENSDART00000090864

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00044659 lncRNA upstream 158659 13656035 ~ 13656319 (+) True XLOC_021529
TCONS_00044793 lncRNA upstream 189447 13624913 ~ 13625531 (+) True XLOC_021528
TCONS_00042762 lncRNA upstream 895244 12916059 ~ 12919734 (+) False XLOC_021522
TCONS_00042759 lncRNA upstream 961814 12840100 ~ 12853164 (+) False XLOC_021521
TCONS_00044792 lncRNA upstream 1114564 12698971 ~ 12700414 (+) True XLOC_021520
TCONS_00044794 lncRNA downstream 21915 13844557 ~ 13847704 (+) False XLOC_021532
TCONS_00044795 lncRNA downstream 22112 13844754 ~ 13850492 (+) True XLOC_021532
TCONS_00044796 lncRNA downstream 105697 13928339 ~ 13941278 (+) False XLOC_021533
TCONS_00042774 lncRNA downstream 274866 14097508 ~ 14142235 (+) False XLOC_021534
TCONS_00044797 lncRNA downstream 411083 14233725 ~ 14235007 (+) True XLOC_021536
TCONS_00042771 mRNA upstream 8483 13721826 ~ 13806495 (+) True XLOC_021530
TCONS_00042767 mRNA upstream 214974 13528053 ~ 13600004 (+) False XLOC_021526
TCONS_00042768 mRNA upstream 215822 13528550 ~ 13599156 (+) False XLOC_021526
TCONS_00042769 mRNA upstream 248035 13533885 ~ 13566943 (+) True XLOC_021526
TCONS_00042765 mRNA upstream 298126 13375359 ~ 13516852 (+) True XLOC_021524
TCONS_00042773 mRNA downstream 105704 13928346 ~ 13932618 (+) True XLOC_021533
TCONS_00042775 mRNA downstream 274866 14097508 ~ 14180307 (+) True XLOC_021534
TCONS_00042776 mRNA downstream 394866 14217508 ~ 14230506 (+) True XLOC_021535
TCONS_00042777 mRNA downstream 446669 14269311 ~ 14270315 (+) True XLOC_021537
TCONS_00042778 mRNA downstream 609681 14432323 ~ 14541590 (+) True XLOC_021538
TCONS_00042770 other upstream 210658 13604218 ~ 13604320 (+) True XLOC_021527
TCONS_00042766 other upstream 372256 13442608 ~ 13442722 (+) True XLOC_021525
TCONS_00042749 other upstream 1596603 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042745 other upstream 1664311 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042743 other upstream 1731307 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042779 other downstream 645361 14468003 ~ 14470571 (+) True XLOC_021539
TCONS_00042786 other downstream 1530491 15353133 ~ 15353249 (+) True XLOC_021542
TCONS_00042789 other downstream 1927376 15750018 ~ 15751546 (+) True XLOC_021546
TCONS_00042790 other downstream 2534066 16356708 ~ 16357229 (+) True XLOC_021553
TCONS_00042792 other downstream 2622319 16444961 ~ 16446040 (+) True XLOC_021556

Expression Profile


Expression of TCONS_00042772 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.
//

Expression of TCONS_00042772 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_01288735_01291953.mRNA True 2140 mRNA 0.47 3 CI01000021 1288596 ~ 1291962 (+)