Item | Value |
---|---|
RNA id | TCONS_00042772 |
length | 2260 |
RNA type | mRNA |
GC content | 0.46 |
exon number | 4 |
gene id | XLOC_021531 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_007134.7 |
NCBI id | CM002907.2 |
chromosome length | 46223584 |
location | 13814978 ~ 13822642 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0048741 | skeletal muscle fiber development | biological_process |
GO:0051694 | pointed-end actin filament capping | biological_process |
GO:0006936 | muscle contraction | biological_process |
GO:0007015 | actin filament organization | biological_process |
GO:0030239 | myofibril assembly | biological_process |
GO:0030240 | skeletal muscle thin filament assembly | biological_process |
GO:0005856 | cytoskeleton | cellular_component |
GO:0005865 | striated muscle thin filament | cellular_component |
GO:0030016 | myofibril | cellular_component |
GO:0031430 | M band | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0005523 | tropomyosin binding | molecular_function |
GO:0003785 | actin monomer binding | molecular_function |
id | description |
---|---|
ZDB-GENE-090313-353 | Predicted to enable tropomyosin binding activity. Acts upstream of or within muscle contraction and skeletal muscle thin filament assembly. Predicted to be located in M band. Predicted to be active in striated muscle thin filament. Human ortholog(s) of this gene implicated in nemaline myopathy 10. Orthologous to human LMOD3 (leiomodin 3). |
ensembl_id | ENSDART00000090864 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00044659 | lncRNA | upstream | 158659 | 13656035 ~ 13656319 (+) | True | XLOC_021529 |
TCONS_00044793 | lncRNA | upstream | 189447 | 13624913 ~ 13625531 (+) | True | XLOC_021528 |
TCONS_00042762 | lncRNA | upstream | 895244 | 12916059 ~ 12919734 (+) | False | XLOC_021522 |
TCONS_00042759 | lncRNA | upstream | 961814 | 12840100 ~ 12853164 (+) | False | XLOC_021521 |
TCONS_00044792 | lncRNA | upstream | 1114564 | 12698971 ~ 12700414 (+) | True | XLOC_021520 |
TCONS_00044794 | lncRNA | downstream | 21915 | 13844557 ~ 13847704 (+) | False | XLOC_021532 |
TCONS_00044795 | lncRNA | downstream | 22112 | 13844754 ~ 13850492 (+) | True | XLOC_021532 |
TCONS_00044796 | lncRNA | downstream | 105697 | 13928339 ~ 13941278 (+) | False | XLOC_021533 |
TCONS_00042774 | lncRNA | downstream | 274866 | 14097508 ~ 14142235 (+) | False | XLOC_021534 |
TCONS_00044797 | lncRNA | downstream | 411083 | 14233725 ~ 14235007 (+) | True | XLOC_021536 |
TCONS_00042771 | mRNA | upstream | 8483 | 13721826 ~ 13806495 (+) | True | XLOC_021530 |
TCONS_00042767 | mRNA | upstream | 214974 | 13528053 ~ 13600004 (+) | False | XLOC_021526 |
TCONS_00042768 | mRNA | upstream | 215822 | 13528550 ~ 13599156 (+) | False | XLOC_021526 |
TCONS_00042769 | mRNA | upstream | 248035 | 13533885 ~ 13566943 (+) | True | XLOC_021526 |
TCONS_00042765 | mRNA | upstream | 298126 | 13375359 ~ 13516852 (+) | True | XLOC_021524 |
TCONS_00042773 | mRNA | downstream | 105704 | 13928346 ~ 13932618 (+) | True | XLOC_021533 |
TCONS_00042775 | mRNA | downstream | 274866 | 14097508 ~ 14180307 (+) | True | XLOC_021534 |
TCONS_00042776 | mRNA | downstream | 394866 | 14217508 ~ 14230506 (+) | True | XLOC_021535 |
TCONS_00042777 | mRNA | downstream | 446669 | 14269311 ~ 14270315 (+) | True | XLOC_021537 |
TCONS_00042778 | mRNA | downstream | 609681 | 14432323 ~ 14541590 (+) | True | XLOC_021538 |
TCONS_00042770 | other | upstream | 210658 | 13604218 ~ 13604320 (+) | True | XLOC_021527 |
TCONS_00042766 | other | upstream | 372256 | 13442608 ~ 13442722 (+) | True | XLOC_021525 |
TCONS_00042749 | other | upstream | 1596603 | 12213967 ~ 12218375 (+) | True | XLOC_021513 |
TCONS_00042745 | other | upstream | 1664311 | 12134839 ~ 12150667 (+) | False | XLOC_021511 |
TCONS_00042743 | other | upstream | 1731307 | 12083557 ~ 12083671 (+) | True | XLOC_021510 |
TCONS_00042779 | other | downstream | 645361 | 14468003 ~ 14470571 (+) | True | XLOC_021539 |
TCONS_00042786 | other | downstream | 1530491 | 15353133 ~ 15353249 (+) | True | XLOC_021542 |
TCONS_00042789 | other | downstream | 1927376 | 15750018 ~ 15751546 (+) | True | XLOC_021546 |
TCONS_00042790 | other | downstream | 2534066 | 16356708 ~ 16357229 (+) | True | XLOC_021553 |
TCONS_00042792 | other | downstream | 2622319 | 16444961 ~ 16446040 (+) | True | XLOC_021556 |
species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
---|---|---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000021_01288735_01291953.mRNA | True | 2140 | mRNA | 0.47 | 3 | CI01000021 | 1288596 ~ 1291962 (+) |