RNA id: TU1338658


Basic Information

Item Value
RNA id TU1338658
length 290
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1173878
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40279757 ~ 40280046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCTTCATCAGAATCTAGAGGCTGTGATGCAGGCTGGTGTCTCCTCGTTTTCTGACTTTTGTCCACTTTGGTCATTTCTGGTTGTGTCTCAAAAGGTAAGTGGTCACAGGACATGAGCAGGTTTCTGTGCAGGACCCTGGAGCGTCCCCTACCCTTTTCTGGTCTCAATTCATAAATCGGCAGGTCTGAACCCATTTGTCTCACCACTGTGTGAATTGTATCTTCCCAATAGTTACGGAGTTTTCCTGGTCCTCCTCTTGGTGTCAGGTTTTTAATCAGAACTCGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1338655 lncRNA upstream 10435 40269121 ~ 40269322 (+) True G1173876
TU1338486 lncRNA upstream 79275 40101780 ~ 40200482 (+) False G1173715
TU1338487 lncRNA upstream 123578 40101780 ~ 40156179 (+) True G1173715
TU1338544 lncRNA upstream 171665 40106950 ~ 40108092 (+) True G1173771
TU1338485 lncRNA upstream 196206 40080474 ~ 40083551 (+) False G1173715
TU1338665 lncRNA downstream 7510 40287556 ~ 40287772 (+) True G1173885
TU1338649 lncRNA downstream 27616 40307662 ~ 40308188 (+) True G1173870
TU1338682 lncRNA downstream 28983 40309029 ~ 40309264 (+) True G1173902
TU1338693 lncRNA downstream 50623 40330669 ~ 40330930 (+) True G1173910
TU1338676 lncRNA downstream 65646 40345692 ~ 40346825 (+) True LOC110485173
XM_036941045.1 mRNA upstream 5898 40270524 ~ 40273859 (+) True LOC118938286
XR_005035537.1 mRNA upstream 123536 40095953 ~ 40156221 (+) False LOC110486337
XR_005035536.1 mRNA upstream 123536 40101513 ~ 40156221 (+) False LOC110486337
XR_002468060.2 mRNA upstream 123536 40101600 ~ 40156221 (+) False LOC110486337
XR_002468059.2 mRNA upstream 123536 40101621 ~ 40156221 (+) True LOC110486337
XM_036941046.1 mRNA downstream 22487 40302533 ~ 40348028 (+) False LOC110485173
XM_036941048.1 mRNA downstream 22487 40302533 ~ 40348028 (+) False LOC110485173
XM_036941049.1 mRNA downstream 42349 40322395 ~ 40348028 (+) False LOC110485173
XM_036941047.1 mRNA downstream 47822 40327868 ~ 40348028 (+) False LOC110485173
XM_036941050.1 mRNA downstream 52068 40332114 ~ 40348028 (+) False LOC110485173
TU1338484 other upstream 123578 40080474 ~ 40156179 (+) False G1173715
TU1337692 other upstream 805978 39473458 ~ 39473779 (+) True G1172996
TU1336842 other upstream 1401378 38876193 ~ 38878379 (+) False LOC110486302
TU1338645 other downstream 74296 40354342 ~ 40355973 (+) False polr3k
TU1338644 other downstream 74416 40354462 ~ 40355973 (+) True polr3k
TU1339054 other downstream 625485 40905531 ~ 40906473 (+) True G1174211
TU1339102 other downstream 721837 41001883 ~ 41003024 (+) True G1174245
TU1339025 other downstream 775406 41055452 ~ 41058201 (+) False LOC110486375

Expression Profile