RNA id: TCONS_00044794



Basic Information


Item Value
RNA id TCONS_00044794
length 2374
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id XLOC_021532
representative False

Chromosome Information


Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 13844557 ~ 13850492 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


atttaaagtaatgttttctatttatttttaaatacaatgaaaataaacTAGCTATAGCGACTTTAATTTCAtttagtttggtatatttaccttcggcccagaGCACTCAacgatatttggtttttggcccttcatacgaaaacGTTTGGGCACCCCAGGTCAAACACATGCACAACCTGCATGTATTCTGTCAGTGCTGCATGATCTTGGTTCGTTGCACCACCTGCTGGTTTATCAGCATTAAAAGTACATAACAAGCCTCGACATATcagtacagttaaaaaaaaagttatacaatAAAGTGCCCATGTGTATACAAATACAATATGAACTGAAAGCATTGGAGAAATTTGGACACACCTGTGGCACCTTAACTATGCTTTATTGTAAAAGTGTCtattataatacaatagaaaacaCTAGTATACACTAGGCAGAACTTTTACACAAAATTATGTTTAAGCATAAAAAAAATACGAACATAAAGCAGTCAAGACTGTCAAAGCAACATCGCCGTCACTCAATACATATAACATTAAAGGGATAGGTCACCCAAAAATCACTTATTTACTCAGCCTTTGCTTAAGTTTTTTCAactgaacacaaaggaaaacaGCTATTCacttccattgttttttctagagatgttaatggctgttttttccaacattcttcaaaatattttgttttggattcaacagaagaaagacattcATAAGTTTAAAACCACTTTACTGTGAGAAAATCGTCATTTTTagctaaactatccctttaagttgttttttttatgacGCTTTATCCAATGTCAAAAATGATAGCAAGCAGAAATACACCATCCCCGAGTTTAGCTCACAGTTTGATAGTGATGTAACAATGTACATCAGAGCTCATCAGGACTATTTTTACAGAAGGATGCGTCATGTTATGCATATGCTTTGTAAGACTAAACATCATTGTGACTCACTTGGACAACTATTGATCCCATTGTTTCTGGAATTTCTTATTTTGTGTGTAGTTTTGTACAGCTTATCTATACATTTCAACAATACATGAACGCAAGGATCACTACAGTACTAGACTGTACTTTAAACCACCACCTGCCCATAAAACACTTCTGAAACATAAGCAGCATTTAATGTTAAGACTTTAGCGTGAGAAAAAAAGGAATGAAACAGATTTGTGTTTCTTAAAGACAGTAGAATGTGAACACAAGGAATGACAGTGCATTAACATCTGAATAGTTCTTAAAGAgaaggttcacccaaaaatatactTACAATTTACACACCCGCAGGTGCTTCCAAACTGTTAGGAGATTCTTTCtgctgttaaatacaaaagaagatgttttgaagaaagttgtAGTCTTCCATACAAATCAATAGAAGTttaatggttacagctttccaactttcttcaaaatatcttctttagtgttcaacagaagaaagatactCGCAGGattgaaacaagtaaaagatgACAGAGTTTTCACTTTCGGGTGAACAGCCCCTTTAACTGCACcagcaaaaataataatgtacaataaaatataaaatgaaataataataagatattttaaagcattgtttctcaaccacgttgccggaggaccaccaacactgcatgttttggatgtctcctttgtctgtcacaaccgttacaggtctttcagtctctgctaatgagctgatcatcttaatcaggtgtgtttagttaaaacgacatggaaaatgtgcagagctggtggtcctccaggaacttggTTAACAAACACTGTTCTAAATCATATACCACAAGGAGCTGGTTATGATTCATAACAtgctaaaaaaaaaggttttccaaTCACGTTGGTCTTTCTGTAAATGCAGTGCTTAAACAGAACGAATTTtcaatatttagtttgtttaaagtgCTCGTTTCAGGCACTCGACTgctgattttttgtttttaaacaggcTTCAGCTTCCGCATCTGCTGCTTTCACAGTTTGTGTGGATTCACCCATTTGTATGTTCCCTCGTAGCGGAAGCCCACTTTCTGCACCAGCTCATCAGCCTCAGCGGGACCACGACTTTAACACAGACAGAGAGAATGTGAGATACATTACACATCGTTTCCTGGAAAAAGTCTGTCGATGGTGAGCTGGTTTATATTACCTCCCGTATTTGTATTTGATGGGTGGTGTTTTCTCAGACTCTATCTGATGAAGGAGAGGAGTGAAGATCCTCCAGGCTTCCCTCAACTCATCACTGTGACAGTAGAAGACAGATTGCGTTTACATTAAGCCACTTTTCCAccgcacacgacatttggacacgactgtcggaatacgctcTTTTGTGGCAGTCACACAGAACTTTTAGTTTTgttg

Function


GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0048856 anatomical structure development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00044659 lncRNA upstream 188238 13656035 ~ 13656319 (+) True XLOC_021529
TCONS_00044793 lncRNA upstream 219026 13624913 ~ 13625531 (+) True XLOC_021528
TCONS_00042762 lncRNA upstream 924823 12916059 ~ 12919734 (+) False XLOC_021522
TCONS_00042759 lncRNA upstream 991393 12840100 ~ 12853164 (+) False XLOC_021521
TCONS_00044792 lncRNA upstream 1144143 12698971 ~ 12700414 (+) True XLOC_021520
TCONS_00044796 lncRNA downstream 80635 13928339 ~ 13941278 (+) False XLOC_021533
TCONS_00042774 lncRNA downstream 249804 14097508 ~ 14142235 (+) False XLOC_021534
TCONS_00044797 lncRNA downstream 386021 14233725 ~ 14235007 (+) True XLOC_021536
TCONS_00044660 lncRNA downstream 1630480 15478184 ~ 15478737 (+) True XLOC_021543
TCONS_00044661 lncRNA downstream 1631041 15478745 ~ 15483453 (+) False XLOC_021544
TCONS_00042772 mRNA upstream 21915 13814978 ~ 13822642 (+) True XLOC_021531
TCONS_00042771 mRNA upstream 38062 13721826 ~ 13806495 (+) True XLOC_021530
TCONS_00042767 mRNA upstream 244553 13528053 ~ 13600004 (+) False XLOC_021526
TCONS_00042768 mRNA upstream 245401 13528550 ~ 13599156 (+) False XLOC_021526
TCONS_00042769 mRNA upstream 277614 13533885 ~ 13566943 (+) True XLOC_021526
TCONS_00042773 mRNA downstream 80642 13928346 ~ 13932618 (+) True XLOC_021533
TCONS_00042775 mRNA downstream 249804 14097508 ~ 14180307 (+) True XLOC_021534
TCONS_00042776 mRNA downstream 369804 14217508 ~ 14230506 (+) True XLOC_021535
TCONS_00042777 mRNA downstream 421607 14269311 ~ 14270315 (+) True XLOC_021537
TCONS_00042778 mRNA downstream 584619 14432323 ~ 14541590 (+) True XLOC_021538
TCONS_00042770 other upstream 240237 13604218 ~ 13604320 (+) True XLOC_021527
TCONS_00042766 other upstream 401835 13442608 ~ 13442722 (+) True XLOC_021525
TCONS_00042749 other upstream 1626182 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042745 other upstream 1693890 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042743 other upstream 1760886 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042779 other downstream 620299 14468003 ~ 14470571 (+) True XLOC_021539
TCONS_00042786 other downstream 1505429 15353133 ~ 15353249 (+) True XLOC_021542
TCONS_00042789 other downstream 1902314 15750018 ~ 15751546 (+) True XLOC_021546
TCONS_00042790 other downstream 2509004 16356708 ~ 16357229 (+) True XLOC_021553
TCONS_00042792 other downstream 2597257 16444961 ~ 16446040 (+) True XLOC_021556

Expression Profile


Expression of TCONS_00044794 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.
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Expression of TCONS_00044794 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.