Item | Value |
---|---|
RNA id | TCONS_00044796 |
length | 407 |
lncRNA type | read_through |
GC content | 0.49 |
exon number | 3 |
gene id | XLOC_021533 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_007134.7 |
NCBI id | CM002907.2 |
chromosome length | 46223584 |
location | 13928339 ~ 13941278 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0016070 | RNA metabolic process | biological_process |
GO:0016072 | rRNA metabolic process | biological_process |
GO:0021536 | diencephalon development | biological_process |
GO:0001732 | formation of cytoplasmic translation initiation complex | biological_process |
GO:0071826 | ribonucleoprotein complex subunit organization | biological_process |
GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
GO:0022618 | ribonucleoprotein complex assembly | biological_process |
GO:0090304 | nucleic acid metabolic process | biological_process |
GO:0006396 | RNA processing | biological_process |
GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
GO:0006725 | cellular aromatic compound metabolic process | biological_process |
GO:1901360 | organic cyclic compound metabolic process | biological_process |
GO:0010467 | gene expression | biological_process |
GO:0043170 | macromolecule metabolic process | biological_process |
GO:0006807 | nitrogen compound metabolic process | biological_process |
GO:0021983 | pituitary gland development | biological_process |
GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
GO:0046483 | heterocycle metabolic process | biological_process |
GO:0071013 | catalytic step 2 spliceosome | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
GO:0005730 | nucleolus | cellular_component |
GO:0043565 | sequence-specific DNA binding | molecular_function |
GO:0003676 | nucleic acid binding | molecular_function |
GO:0003677 | DNA binding | molecular_function |
GO:0097159 | organic cyclic compound binding | molecular_function |
GO:1901363 | heterocyclic compound binding | molecular_function |
GO:0003723 | RNA binding | molecular_function |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00044795 | lncRNA | upstream | 77847 | 13844754 ~ 13850492 (+) | True | XLOC_021532 |
TCONS_00044794 | lncRNA | upstream | 80635 | 13844557 ~ 13847704 (+) | False | XLOC_021532 |
TCONS_00044659 | lncRNA | upstream | 272020 | 13656035 ~ 13656319 (+) | True | XLOC_021529 |
TCONS_00044793 | lncRNA | upstream | 302808 | 13624913 ~ 13625531 (+) | True | XLOC_021528 |
TCONS_00042762 | lncRNA | upstream | 1008605 | 12916059 ~ 12919734 (+) | False | XLOC_021522 |
TCONS_00042774 | lncRNA | downstream | 156230 | 14097508 ~ 14142235 (+) | False | XLOC_021534 |
TCONS_00044797 | lncRNA | downstream | 292447 | 14233725 ~ 14235007 (+) | True | XLOC_021536 |
TCONS_00044660 | lncRNA | downstream | 1536906 | 15478184 ~ 15478737 (+) | True | XLOC_021543 |
TCONS_00044661 | lncRNA | downstream | 1537467 | 15478745 ~ 15483453 (+) | False | XLOC_021544 |
TCONS_00042787 | lncRNA | downstream | 1537803 | 15479081 ~ 15483879 (+) | False | XLOC_021544 |
TCONS_00042772 | mRNA | upstream | 105697 | 13814978 ~ 13822642 (+) | True | XLOC_021531 |
TCONS_00042771 | mRNA | upstream | 121844 | 13721826 ~ 13806495 (+) | True | XLOC_021530 |
TCONS_00042767 | mRNA | upstream | 328335 | 13528053 ~ 13600004 (+) | False | XLOC_021526 |
TCONS_00042775 | mRNA | downstream | 156230 | 14097508 ~ 14180307 (+) | True | XLOC_021534 |
TCONS_00042776 | mRNA | downstream | 276230 | 14217508 ~ 14230506 (+) | True | XLOC_021535 |
TCONS_00042777 | mRNA | downstream | 328033 | 14269311 ~ 14270315 (+) | True | XLOC_021537 |
TCONS_00042778 | mRNA | downstream | 491045 | 14432323 ~ 14541590 (+) | True | XLOC_021538 |
TCONS_00042781 | mRNA | downstream | 649205 | 14590483 ~ 14731481 (+) | False | XLOC_021540 |
TCONS_00042770 | other | upstream | 324019 | 13604218 ~ 13604320 (+) | True | XLOC_021527 |
TCONS_00042766 | other | upstream | 485617 | 13442608 ~ 13442722 (+) | True | XLOC_021525 |
TCONS_00042749 | other | upstream | 1709964 | 12213967 ~ 12218375 (+) | True | XLOC_021513 |
TCONS_00042745 | other | upstream | 1777672 | 12134839 ~ 12150667 (+) | False | XLOC_021511 |
TCONS_00042743 | other | upstream | 1844668 | 12083557 ~ 12083671 (+) | True | XLOC_021510 |
TCONS_00042779 | other | downstream | 526725 | 14468003 ~ 14470571 (+) | True | XLOC_021539 |
TCONS_00042786 | other | downstream | 1411855 | 15353133 ~ 15353249 (+) | True | XLOC_021542 |
TCONS_00042789 | other | downstream | 1808740 | 15750018 ~ 15751546 (+) | True | XLOC_021546 |
TCONS_00042790 | other | downstream | 2415430 | 16356708 ~ 16357229 (+) | True | XLOC_021553 |
TCONS_00042792 | other | downstream | 2503683 | 16444961 ~ 16446040 (+) | True | XLOC_021556 |