RNA id: TCONS_00044796



Basic Information


Item Value
RNA id TCONS_00044796
length 407
lncRNA type read_through
GC content 0.49
exon number 3
gene id XLOC_021533
representative False

Chromosome Information


Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 13928339 ~ 13941278 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CGGCTCGTGTTCGACTCTTTTCGGTTCTCGTTCGGCTAAGCTCGTTGTTGTTAAACAAGTTCTTCTCGTCAAAACAACTGTTTAATAGTCATGGCTTTCTTCGGAATCACATATCTGGGTTACCAGAACCCGTTTGGGGATAGGATGCTTCATTCTACCCAAAACAAACCAGATGCGCGAGACCCATCAGACCTGCATCTCGTCAGCCAGAACAGATATAAGGATCATCTGATCACCAGACACGCTCAGAGGTTGATGGCGATGGCTACTTGTTTGTCTTCAGCTTGCCTGGAGAAATGCTCCTCTCCGGGGAATtgtgggaaaccagaggaccTGTAGTGCACTGCTAACTGTTGGGAGGTCCGTCGTTCAGGAAGTAAGTGGTCATTTCACCCTTACCCTTCACC

Function


GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0021983 pituitary gland development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00044795 lncRNA upstream 77847 13844754 ~ 13850492 (+) True XLOC_021532
TCONS_00044794 lncRNA upstream 80635 13844557 ~ 13847704 (+) False XLOC_021532
TCONS_00044659 lncRNA upstream 272020 13656035 ~ 13656319 (+) True XLOC_021529
TCONS_00044793 lncRNA upstream 302808 13624913 ~ 13625531 (+) True XLOC_021528
TCONS_00042762 lncRNA upstream 1008605 12916059 ~ 12919734 (+) False XLOC_021522
TCONS_00042774 lncRNA downstream 156230 14097508 ~ 14142235 (+) False XLOC_021534
TCONS_00044797 lncRNA downstream 292447 14233725 ~ 14235007 (+) True XLOC_021536
TCONS_00044660 lncRNA downstream 1536906 15478184 ~ 15478737 (+) True XLOC_021543
TCONS_00044661 lncRNA downstream 1537467 15478745 ~ 15483453 (+) False XLOC_021544
TCONS_00042787 lncRNA downstream 1537803 15479081 ~ 15483879 (+) False XLOC_021544
TCONS_00042772 mRNA upstream 105697 13814978 ~ 13822642 (+) True XLOC_021531
TCONS_00042771 mRNA upstream 121844 13721826 ~ 13806495 (+) True XLOC_021530
TCONS_00042767 mRNA upstream 328335 13528053 ~ 13600004 (+) False XLOC_021526
TCONS_00042775 mRNA downstream 156230 14097508 ~ 14180307 (+) True XLOC_021534
TCONS_00042776 mRNA downstream 276230 14217508 ~ 14230506 (+) True XLOC_021535
TCONS_00042777 mRNA downstream 328033 14269311 ~ 14270315 (+) True XLOC_021537
TCONS_00042778 mRNA downstream 491045 14432323 ~ 14541590 (+) True XLOC_021538
TCONS_00042781 mRNA downstream 649205 14590483 ~ 14731481 (+) False XLOC_021540
TCONS_00042770 other upstream 324019 13604218 ~ 13604320 (+) True XLOC_021527
TCONS_00042766 other upstream 485617 13442608 ~ 13442722 (+) True XLOC_021525
TCONS_00042749 other upstream 1709964 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042745 other upstream 1777672 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042743 other upstream 1844668 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042779 other downstream 526725 14468003 ~ 14470571 (+) True XLOC_021539
TCONS_00042786 other downstream 1411855 15353133 ~ 15353249 (+) True XLOC_021542
TCONS_00042789 other downstream 1808740 15750018 ~ 15751546 (+) True XLOC_021546
TCONS_00042790 other downstream 2415430 16356708 ~ 16357229 (+) True XLOC_021553
TCONS_00042792 other downstream 2503683 16444961 ~ 16446040 (+) True XLOC_021556

Expression Profile


Expression of TCONS_00044796 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.
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Expression of TCONS_00044796 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.