RNA id: TU1339628


Basic Information

Item Value
RNA id TU1339628
length 491
RNA type TUCP
GC content 0.52
exon number 2
gene id G1174741
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40456895 ~ 40457681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCATTGATTCTTCAACAGTCTGAATGAATGAGTTGGGAATCCCTCTGCATGCCTGGTTCTTCGTCTGGTCAGTGTGTATGATTCTAATGCATGTTCAAACTTCATTTCCCTTTACAATTTCAATGCTTGCAAAGCTTTACTCCATTTTGCACTATTTCTGTTTTTATCGCTTTTCTAGATGCTGTTTCTTGCTCACCACCTCTTCTTctttcctctttccttctcttttttGCCCTGccctatcttcctcctcctctcaccttcctaccctctccccctgccctgtcctcctcctcctctcaccttcctaccctctccccctgccctgtcctcctcctcctctcaccttcctaccctctccccctgtcctcctcctcctctcaccttcctaccctctccccctgccctgtcctcctcctcctctcaccttcctaccctctccccctgtcctcctcctcctctcaccttcctaccctctccccctgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1339627 lncRNA downstream 3872 40452650 ~ 40453023 (-) True G1174740
TU1339493 lncRNA downstream 104668 40351910 ~ 40352227 (-) True G1174614
TU1339561 lncRNA downstream 113557 40342475 ~ 40343338 (-) True G1174680
TU1339558 lncRNA downstream 114857 40339643 ~ 40342038 (-) False G1174678
TU1339559 lncRNA downstream 116462 40339643 ~ 40340433 (-) True G1174678
TU1339653 lncRNA upstream 41204 40498885 ~ 40499124 (-) True G1174765
TU1339660 lncRNA upstream 76200 40533881 ~ 40534162 (-) True G1174771
TU1339595 lncRNA upstream 77062 40534743 ~ 40535632 (-) True G1174708
TU1339661 lncRNA upstream 78086 40535767 ~ 40536457 (-) True G1174772
TU1339593 lncRNA upstream 83098 40540779 ~ 40541827 (-) True G1174706
XM_021557864.2 mRNA downstream 59666 40388944 ~ 40397229 (-) True LOC110486345
XM_021557860.2 mRNA downstream 86860 40359795 ~ 40370035 (-) True LOC110486343
XM_036941054.1 mRNA downstream 102325 40352093 ~ 40354570 (-) True snrnp25
XM_021557863.2 mRNA downstream 102626 40352093 ~ 40354269 (-) False snrnp25
XR_005035538.1 mRNA downstream 102647 40352093 ~ 40354248 (-) False snrnp25
XM_021557867.2 mRNA upstream 50397 40508078 ~ 40520176 (-) False LOC110486348
XR_005035539.1 mRNA upstream 50397 40508078 ~ 40520176 (-) False LOC110486348
XR_005035540.1 mRNA upstream 50397 40508078 ~ 40520176 (-) False LOC110486348
XM_021557870.2 mRNA upstream 50397 40508078 ~ 40520177 (-) True LOC110486348
XM_021557871.2 mRNA upstream 75121 40532802 ~ 40533721 (-) True LOC110486350
TU1339538 other downstream 140036 40316118 ~ 40316859 (-) True G1174658
TU1338408 other downstream 531936 39923922 ~ 39924959 (-) True G1173645
TU1337573 other downstream 1125656 39328216 ~ 39331239 (-) True LOC110486318
TU1337501 other downstream 1206585 39248152 ~ 39250310 (-) False LOC110486313
TU1337502 other downstream 1206585 39248152 ~ 39250310 (-) True LOC110486313
TU1339785 other upstream 376222 40833903 ~ 40834636 (-) True LOC110486364
TU1340027 other upstream 827101 41284782 ~ 41289789 (-) False col5a3a
TU1340025 other upstream 832668 41290349 ~ 41291794 (-) True col5a3a
TU1340945 other upstream 1539633 41997314 ~ 41997637 (-) True G1175904
TU1340947 other upstream 1541671 41999352 ~ 42000091 (-) True G1175906

Expression Profile