RNA id: TU1339736


Basic Information

Item Value
RNA id TU1339736
length 650
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1174839
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40724686 ~ 40725836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGGTCAGGGGTACATTAGATTAGAGTTAGGGTAGGTCAGGGGTACATTAGATTAGAGTTATGTTAGGTCAGGGGTATGTTAGAGTTAGAGTAGGTCAGGGGTATGTTAGAGTAGAGTTAGGGTAGGTCAGGGGTACGTTAGATTAGAGTTAGGGTAGGTCAGGGGTACGTTAGATTAGAGTTAGGGTAGGTCAGGGGTATGTTAGAGTAGAGTTAGGGTAGGTCAGGGGTACGTTAGATTAGAGTTATGGTAGGTTAGGGGTACATTAGACTAGAGTTATGGTAGGTCAGGGGTAGGTTAGACTAGAGTTAGGGTAGGTCAGGGGTACGTTAGAGTAGAGTTAAAGTAGGTTAGAGCAGGGGTCAGTTGCGCCAGAAGTGAGTTAAGGCTGTACCTGTAACCTGGTCCACCAGGATGCGGGAGGTGATGATGCGTCCGTACTGGGAGAACAGCTGCTCCATGTCCTTCTGGGTCATGGTCTTAGGCAGACCGCTCACATAGAGGTTGGCATCACGGATAGATGCTGAACTGGGACGGGCGTACGATACCTACAGCACATCAAAGAAACACACATTTTAATACTGATATCAAATCAAAGGTTTCCCATATCTTTACATAAAACCATatagtcatttttttatttacccA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1339592 lncRNA downstream 62852 40578110 ~ 40661834 (-) True LOC110486360
TU1339681 lncRNA downstream 130814 40592979 ~ 40593872 (-) True G1174792
TU1339593 lncRNA downstream 182859 40540779 ~ 40541827 (-) True G1174706
TU1339661 lncRNA downstream 188229 40535767 ~ 40536457 (-) True G1174772
TU1339595 lncRNA downstream 189054 40534743 ~ 40535632 (-) True G1174708
TU1339742 lncRNA upstream 18789 40744625 ~ 40747714 (-) False G1174844
TU1339743 lncRNA upstream 18789 40744625 ~ 40748705 (-) True G1174844
TU1339825 lncRNA upstream 133076 40858912 ~ 40859686 (-) True LOC110486365
TU1339832 lncRNA upstream 170825 40896661 ~ 40896873 (-) True G1174918
TU1339847 lncRNA upstream 192043 40917879 ~ 40918146 (-) True G1174933
XM_036941064.1 mRNA downstream 24489 40661785 ~ 40700197 (-) False LOC110486360
XM_036941065.1 mRNA downstream 24489 40661785 ~ 40700197 (-) False LOC110486360
XM_036941066.1 mRNA downstream 24489 40661785 ~ 40700197 (-) False LOC110486360
XM_036941067.1 mRNA downstream 24490 40661785 ~ 40700196 (-) False LOC110486360
XM_036941068.1 mRNA downstream 24490 40661785 ~ 40700196 (-) False LOC110486360
XM_021557890.2 mRNA upstream 7873 40733709 ~ 40742946 (-) False LOC110486362
XM_021557889.2 mRNA upstream 7873 40733709 ~ 40742950 (-) True LOC110486362
XM_021557896.2 mRNA upstream 23259 40749095 ~ 40764069 (-) False LOC110486363
XM_021557895.2 mRNA upstream 23259 40749095 ~ 40775504 (-) True LOC110486363
XM_021557897.2 mRNA upstream 105566 40831402 ~ 40843483 (-) False LOC110486364
TU1339628 other downstream 267005 40456895 ~ 40457681 (-) True G1174741
TU1339538 other downstream 407827 40316118 ~ 40316859 (-) True G1174658
TU1338408 other downstream 799727 39923922 ~ 39924959 (-) True G1173645
TU1337573 other downstream 1393447 39328216 ~ 39331239 (-) True LOC110486318
TU1337502 other downstream 1474376 39248152 ~ 39250310 (-) True LOC110486313
TU1339785 other upstream 108067 40833903 ~ 40834636 (-) True LOC110486364
TU1340027 other upstream 558946 41284782 ~ 41289789 (-) False col5a3a
TU1340025 other upstream 564513 41290349 ~ 41291794 (-) True col5a3a
TU1340945 other upstream 1271478 41997314 ~ 41997637 (-) True G1175904
TU1340947 other upstream 1273516 41999352 ~ 42000091 (-) True G1175906

Expression Profile