RNA id: TCONS_00005894


Basic Information

Item Value
RNA id TCONS_00005894
length 894
lncRNA type inter_gene
GC content 0.42
exon number 8
gene id XLOC_002132
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23983307 ~ 23992917 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTCTGAGGGCACGGACAGTGAGCGAGTGGAGATGGTGGTGCCTATTTACGAGAGTGCAGATTGTTTGAGAGATCAGGACTTCAGGACAAGCATGCAACAACCGATTCAGCAAACAGGAAGTGACTGTGTGAGGAAGAAAAGTTTCAGAGCATCTACAGTGGGTTTGTCTCTgctgttttttcttctggtgacTGCAGTTATAGCGCTGAGTGTGTACATCtatacaaacaAGAGACGCCAGCTTCTGACCAACATCACCAACATTACAGAAGACAGAAATGAGCTGCTGAAAAATATCACCAACCTCCCTGAAGACAGAGATGAGTTGCTTAAAAACATCACCAACCTCACAAAAGACAGAGATGAGCTACTCAACAATATCACTAAACTCAGAGAAGACAAAGATGAGCTACAACAACATCACCAACATTACAGAAGACAGAGAAAAGAGCTACTAACCAACAATACCAGACtaactgaacaaaacaaaaagcttaaACAATGGGAAAAAAAGATGGTCAAaagattgaaCCAAAGAGATGGATGGTTTTACTATCAGTCCAGTTTATACTTCATTTCCTCTGAGAAGAAGAGCTGGTCTGAGAGCAGAAGATACTGTACAGACAGAAGAGGAGATCTGAtcattataaacagcagagaggaACAAAATTTTGTTCACAAGAAGGCTGGTCTTTCCGGAGCCTGGATTGGTCTGACTGACCATGAAAAAGTGGGCATTTGGAAATGGGTTGATGGCAGCACATTGACCACTGGGATTTGGGCatctggacaaccaaatgcacaGACAGAAGCAAACTGCGTTACGCTTATTTCCTCATCATGGTATAACAAGTTGTGTACTGATAAAATGAAATGGGTGTGCGAgaagaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005893 lncRNA upstream 392249 23588675 ~ 23591058 (+) True XLOC_002131
TCONS_00005708 lncRNA upstream 439241 23542617 ~ 23544066 (+) True XLOC_002128
TCONS_00005892 lncRNA upstream 767428 23141296 ~ 23215879 (+) True XLOC_002121
TCONS_00004113 lncRNA upstream 944017 23034329 ~ 23039290 (+) True XLOC_002119
TCONS_00005891 lncRNA upstream 1017881 22960289 ~ 22965426 (+) True XLOC_002117
TCONS_00005710 lncRNA downstream 103322 24096239 ~ 24096470 (+) True XLOC_002134
TCONS_00005711 lncRNA downstream 104138 24097055 ~ 24097310 (+) True XLOC_002135
TCONS_00004129 lncRNA downstream 323936 24316853 ~ 24375160 (+) True XLOC_002136
TCONS_00004131 lncRNA downstream 404181 24397098 ~ 24398671 (+) True XLOC_002138
TCONS_00005895 lncRNA downstream 411773 24404690 ~ 24412025 (+) False XLOC_002139
TCONS_00004124 mRNA upstream 423763 23553533 ~ 23559544 (+) True XLOC_002130
TCONS_00004123 mRNA upstream 432351 23548674 ~ 23550956 (+) True XLOC_002129
TCONS_00004122 mRNA upstream 441419 23537576 ~ 23541888 (+) True XLOC_002127
TCONS_00004121 mRNA upstream 459992 23520952 ~ 23523315 (+) True XLOC_002126
TCONS_00004120 mRNA upstream 463409 23511816 ~ 23519898 (+) True XLOC_002125
TCONS_00004127 mRNA downstream 55746 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004126 mRNA downstream 55746 24048663 ~ 24298042 (+) False XLOC_002133
TCONS_00004128 mRNA downstream 55966 24048883 ~ 24296589 (+) True XLOC_002133
TCONS_00004132 mRNA downstream 429100 24422017 ~ 24435893 (+) False XLOC_002140
TCONS_00004133 mRNA downstream 429100 24422017 ~ 24442546 (+) False XLOC_002140
TCONS_00004117 other upstream 565360 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004107 other upstream 1076387 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004103 other upstream 1135903 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004086 other upstream 1947060 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004078 other upstream 2002642 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004130 other downstream 360833 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004134 other downstream 429314 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004135 other downstream 434012 24426929 ~ 24435439 (+) False XLOC_002140
TCONS_00004147 other downstream 667225 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004149 other downstream 675857 24668774 ~ 24672929 (+) False XLOC_002143