RNA id: TCONS_00042781



Basic Information


Item Value
RNA id TCONS_00042781
length 1826
RNA type mRNA
GC content 0.54
exon number 8
gene id XLOC_021540
representative False

Chromosome Information


Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14590483 ~ 14731892 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTCTTTTTAGAAAGTACGTCAATTTTTACCGGTGTTTTTTTTATCGTCTCCCTCTTCCTCTCTGTCTATGTACCGGCCGGCAAACCATGCAGACACACCTCCTAAACTCTCAAAAAAAAAGCCAACCCGACGTTTCCCGAACAGCCAATCAGCTGCAGCGCAGTGATGGCCGCGTGCCTAAATAGAATGTTTATGTACCGCGAGAGCCAATCGGAATCAATGAGGAGCGGGCCGAGCGAATCTCGCCTGGCTGCACGCGCAGGATAGAGTGGGCGTGGCGTCGGGCGAGAGAGAAAAGCAAAACAATCATTTTTATCCCCTTTACCGGCTGCTTTTAGGGTCCGTAGTGAAATACGCTCTCAGCAGGGAGTCGTAGTCCACACAACACTGTTAAATGCATCTTATCCCGCTTTGCACTAAAATCTACCGACAGCTGGTGATTTTGCTTTAGTTGTATTTCATCCAGGTCGAAAATGACTTCCAAGCGCCTTCTCGAGCCGCAGCGAGCCGGCGACTGCACGCCCGAGGGGGGCTGCACCGGCCAGCGAGAGCCTGTCACTGGAAAAGCGTTCAAAACAAACACGCAGCTGCACGAAGGCGCTATAAGGAATCTTAGCAAGGAAATCTCTCAAAACGGACATTATCATACCTCAACGAGGCACTACATTCATAAGAAATTTGCATGTGGCAGAGAGGAGGAGGAGCCGAGTTCAGGTGGACTCCTTAAACATGGCTGCCCTGCTCATCGCCTGGTCCTCAACGGCTTCAGAGTACAAGACCAAACCCAAGTAGAGGCTCGAAGCCCAGTGAGAGGCCCTGGAGAGCCAGCCTGTCGTCTGCCATCTCCTGAGATGCCTCATCCAAACACGTCCTCTATCATCCCCGTACCACACGACAGGAGTCCTTCTGGTCATGCTGATAAAGAAGTAATGGCCGCCACCGTCCTGACCACACTGTCCACCAGCCCGTTGGTGCTCAACCCTTCTTCCAGCGCCTCAGGTGTAGATCTGGCTGGTAAAGCCTGGAAAGAGAGTCTGTCTGCCAGCTACAGCAGCTCCACCAGTGGAAACTGGAGTTGGGATGCCAGTGACCAATCAGTGCCCTCCACGCCATCACCGCCGCTCTCCAATGACACGGGCAAGAGCTTCCTGCTGTCCTGCCAGAGCGACGACAACAATGAAGAGAGTGAGAGCACACACTTCCTGTTCGAGGACCCCATCCCTCGCAAACGAAAGAACTCCATGAAGGTGATGTTTAAGTGTCTGTGGAAGAACTGTGAAAAAGTCCTCAGCACCTCCTCAGGGATCCAGCGCCACATCCGCACCGTCCACTTGGGgCGAAATGGAGATTCTGACTACAGCGATGGCGAGGAGGATTTCTACTACTCTGAAATCGAGGTGAACATGGACACTCTTTCGGAGGGTCTGTCTAACCTCACGCCCACGTCTCCGACCACGTCCGGGCCGCCGCCTGTGTTCCCCGTCCTGACCTGTGATGTGTCCCGAACTGAACCTGCCAACGTGATCCACACCCCGCTCAGTCAATCAGCACCCTCGGCACTGTGCCATATCCGCACTGACCACGCTTACCAGggccCGATGACTCAAATCCGCACTGTCAGCATCGGTGAGAAGAGACAACCTGTTAACCACACCACTGTCAGCAAAACACACACCAACAGCACCTCCACTTCCAAACCCACCACTGGAACCAGGAAACCCCGCGGTGAAGCCAAGAAATGTCGGAAGGTGTATGGCATGGAGAAGAAGGACCTATGGTGCACAGCGTGCCGCTGGAAGAAGGCCTGCCAGCGCTTCACTGACTGA

Function


GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-83 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SLC2A4RG (SLC2A4 regulator).

Ensembl:

ensembl_id ENSDART00000184868

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00044797 lncRNA upstream 355476 14233725 ~ 14235007 (+) True XLOC_021536
TCONS_00042774 lncRNA upstream 448248 14097508 ~ 14142235 (+) False XLOC_021534
TCONS_00044796 lncRNA upstream 649205 13928339 ~ 13941278 (+) False XLOC_021533
TCONS_00044795 lncRNA upstream 739991 13844754 ~ 13850492 (+) True XLOC_021532
TCONS_00044794 lncRNA upstream 742779 13844557 ~ 13847704 (+) False XLOC_021532
TCONS_00044660 lncRNA downstream 746703 15478184 ~ 15478737 (+) True XLOC_021543
TCONS_00044661 lncRNA downstream 747264 15478745 ~ 15483453 (+) False XLOC_021544
TCONS_00042787 lncRNA downstream 747600 15479081 ~ 15483879 (+) False XLOC_021544
TCONS_00042788 lncRNA downstream 750459 15481940 ~ 15483879 (+) True XLOC_021544
TCONS_00044662 lncRNA downstream 1018271 15749752 ~ 15756516 (+) True XLOC_021545
TCONS_00042778 mRNA upstream 48893 14432323 ~ 14541590 (+) True XLOC_021538
TCONS_00042777 mRNA upstream 320168 14269311 ~ 14270315 (+) True XLOC_021537
TCONS_00042776 mRNA upstream 359977 14217508 ~ 14230506 (+) True XLOC_021535
TCONS_00042775 mRNA upstream 410176 14097508 ~ 14180307 (+) True XLOC_021534
TCONS_00042773 mRNA upstream 657865 13928346 ~ 13932618 (+) True XLOC_021533
TCONS_00042785 mRNA downstream 40498 14771979 ~ 14803801 (+) True XLOC_021541
TCONS_00042791 mRNA downstream 1699078 16430559 ~ 16525698 (+) False XLOC_021555
TCONS_00042793 mRNA downstream 1738049 16469530 ~ 16525698 (+) True XLOC_021555
TCONS_00042795 mRNA downstream 1889320 16620801 ~ 16642181 (+) False XLOC_021557
TCONS_00042794 mRNA downstream 1889320 16620801 ~ 16642181 (+) False XLOC_021557
TCONS_00042779 other upstream 119912 14468003 ~ 14470571 (+) True XLOC_021539
TCONS_00042770 other upstream 986163 13604218 ~ 13604320 (+) True XLOC_021527
TCONS_00042766 other upstream 1147761 13442608 ~ 13442722 (+) True XLOC_021525
TCONS_00042749 other upstream 2372108 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042745 other upstream 2439816 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042786 other downstream 621652 15353133 ~ 15353249 (+) True XLOC_021542
TCONS_00042789 other downstream 1018537 15750018 ~ 15751546 (+) True XLOC_021546
TCONS_00042790 other downstream 1625227 16356708 ~ 16357229 (+) True XLOC_021553
TCONS_00042792 other downstream 1713480 16444961 ~ 16446040 (+) True XLOC_021556
TCONS_00042812 other downstream 2127436 16858917 ~ 16859033 (+) True XLOC_021565

Expression Profile


Expression of TCONS_00042781 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.
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Expression of TCONS_00042781 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.