RNA id: TU1340211



Basic Information


Item Value
RNA id TU1340211
length 261
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G1175256
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41673580 ~ 41673840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGAGTGGAGGGGAAAGATGTAGGTGTGCTCCAGGAAGTTTTAGAACTGGTGCTCCTGCTGGGGCCTTGAGTACAACTTAATCTCACAGTGCGGGAGAGAGAAGTTACTGCCTCCTCACTTCCTGATCCAGGAGAGCCTGGCAACTCAGTCAGCTCTATCTGCATGGTGAGGTCAAGGGCGGGAACCACAACTGTCGATTTGATCTTCTTCACCCATGTGACAATGTCCATGCACTTGGCAGTAAACTCATCTCTAGTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1340193 lncRNA upstream 30808 41642506 ~ 41642772 (+) True G1175238
TU1340181 lncRNA upstream 53460 41619882 ~ 41620120 (+) True G1175226
TU1340176 lncRNA upstream 64542 41607957 ~ 41609038 (+) True LOC110486389
TU1340174 lncRNA upstream 67201 41606175 ~ 41606379 (+) True G1175219
TU1340173 lncRNA upstream 68362 41604999 ~ 41605218 (+) True G1175218
TU1340212 lncRNA downstream 521 41674361 ~ 41674622 (+) True G1175257
TU1340215 lncRNA downstream 4142 41677982 ~ 41678186 (+) True G1175260
TU1340218 lncRNA downstream 7042 41680882 ~ 41681308 (+) True G1175263
TU1340256 lncRNA downstream 53092 41726932 ~ 41727536 (+) True G1175286
TU1340247 lncRNA downstream 56198 41730038 ~ 41732993 (+) False LOC110486393
XM_021557938.2 mRNA upstream 63405 41607918 ~ 41610175 (+) False LOC110486389
XM_021557936.2 mRNA upstream 70460 41595135 ~ 41603120 (+) False LOC110486388
XM_021557940.2 mRNA downstream 11022 41684862 ~ 41709237 (+) True LOC110486391
XM_021557942.2 mRNA downstream 42539 41716379 ~ 41724910 (+) False LOC110486392
XM_021557944.2 mRNA downstream 42539 41716379 ~ 41724910 (+) False LOC110486392
XM_021557946.2 mRNA downstream 42539 41716379 ~ 41724910 (+) False LOC110486392
XM_021557947.2 mRNA downstream 42540 41716380 ~ 41724910 (+) False LOC110486392
TU1340105 other upstream 132900 41539491 ~ 41540680 (+) True G1175164
TU1339027 other upstream 613643 41057620 ~ 41059937 (+) False LOC110486375
TU1339025 other upstream 615379 41055452 ~ 41058201 (+) False LOC110486375
TU1339102 other upstream 670556 41001883 ~ 41003024 (+) True G1174245
TU1339054 other upstream 767107 40905531 ~ 40906473 (+) True G1174211
TU1340269 other downstream 99650 41773490 ~ 41776980 (+) True LOC110486395
TU1340287 other downstream 120520 41794360 ~ 41794807 (+) True G1175317
TU1340321 other downstream 183349 41857189 ~ 41859343 (+) True G1175346
TU1340698 other downstream 252435 41926275 ~ 41926656 (+) True G1175667
TU1341137 other downstream 615251 42289091 ~ 42291866 (+) True G1176084

Expression Profile