RNA id: TU1340296



Basic Information


Item Value
RNA id TU1340296
length 315
lncRNA type intronic
GC content 0.50
exon number 1
gene id G1175326
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41812536 ~ 41812850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttcctgaagagctcagtgactttcaacgtggcactgtcaaatttctaccctgctagagctgccccggtcaactgtaactgttgttgctattgtgaagtggaaacatctaggagcaacaccggctcagctgcgaagtggtaggcctcacaagctcacagaacaggaccgccgagtgctgaagcgggtaaaaatcgtctgtcctcagtttcaacactcactactgagttccaaactgcctctggaagcaacgtcagtacaataactgtttgttcgggagcttcatgaacaATGgacaagcagccgcacacaagccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1340294 lncRNA upstream 4709 41807627 ~ 41807827 (+) True G1175324
TU1340292 lncRNA upstream 6262 41806018 ~ 41806274 (+) True G1175322
TU1340288 lncRNA upstream 17364 41794953 ~ 41795172 (+) True G1175318
TU1340285 lncRNA upstream 19836 41792408 ~ 41792700 (+) True G1175315
TU1340284 lncRNA upstream 21228 41791005 ~ 41791308 (+) True G1175314
TU1340299 lncRNA downstream 3639 41816489 ~ 41816734 (+) True G1175329
TU1340301 lncRNA downstream 7262 41820112 ~ 41820324 (+) True G1175331
TU1340662 lncRNA downstream 64690 41877540 ~ 41877774 (+) True G1175631
TU1340679 lncRNA downstream 88297 41901147 ~ 41901639 (+) True G1175648
TU1340690 lncRNA downstream 102540 41915390 ~ 41915644 (+) True G1175659
XM_021557956.2 mRNA upstream 35523 41773456 ~ 41777013 (+) False LOC110486395
XM_036941122.1 mRNA upstream 40092 41739509 ~ 41772444 (+) False LOC110486394
XM_021557960.2 mRNA downstream 58798 41871648 ~ 42008584 (+) False tanc2a
XM_021557961.2 mRNA downstream 58798 41871648 ~ 42008584 (+) False tanc2a
XM_021557962.2 mRNA downstream 58798 41871648 ~ 42008584 (+) False tanc2a
XM_036941127.1 mRNA downstream 58798 41871648 ~ 42008584 (+) False tanc2a
XM_036941128.1 mRNA downstream 58798 41871648 ~ 42008584 (+) True tanc2a
TU1340287 other upstream 17729 41794360 ~ 41794807 (+) True G1175317
TU1340269 other upstream 35556 41773490 ~ 41776980 (+) True LOC110486395
TU1340105 other upstream 271856 41539491 ~ 41540680 (+) True G1175164
TU1339027 other upstream 752599 41057620 ~ 41059937 (+) False LOC110486375
TU1339025 other upstream 754335 41055452 ~ 41058201 (+) False LOC110486375
TU1340321 other downstream 44339 41857189 ~ 41859343 (+) True G1175346
TU1340698 other downstream 113425 41926275 ~ 41926656 (+) True G1175667
TU1341137 other downstream 476241 42289091 ~ 42291866 (+) True G1176084
TU1341375 other downstream 669527 42482377 ~ 42484520 (+) True G1176278
TU1341428 other downstream 913152 42726002 ~ 42730111 (+) True LOC110486430

Expression Profile