RNA id: TU1340301


Basic Information

Item Value
RNA id TU1340301
length 213
lncRNA type intronic
GC content 0.54
exon number 1
gene id G1175331
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41820112 ~ 41820324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACgtaaccctccagcatgacaatgccaccagccatactgctcagtgagtgatttcctgcaagacaggaatgtcagtgttctgccatggccagtgaagagccaggatctcaatcccattgagcacgtctgggacctgttggatcggagggtgaggactagggccattccccccagaaatgtccgggtacttgcaggtgccttagtggaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1340299 lncRNA upstream 3378 41816489 ~ 41816734 (+) True G1175329
TU1340296 lncRNA upstream 7262 41812536 ~ 41812850 (+) True G1175326
TU1340294 lncRNA upstream 12285 41807627 ~ 41807827 (+) True G1175324
TU1340292 lncRNA upstream 13838 41806018 ~ 41806274 (+) True G1175322
TU1340288 lncRNA upstream 24940 41794953 ~ 41795172 (+) True G1175318
TU1340662 lncRNA downstream 57216 41877540 ~ 41877774 (+) True G1175631
TU1340679 lncRNA downstream 80823 41901147 ~ 41901639 (+) True G1175648
TU1340690 lncRNA downstream 95066 41915390 ~ 41915644 (+) True G1175659
TU1340699 lncRNA downstream 107082 41927406 ~ 41927726 (+) True G1175668
TU1340701 lncRNA downstream 109182 41929506 ~ 41929706 (+) True G1175670
XM_021557956.2 mRNA upstream 43099 41773456 ~ 41777013 (+) False LOC110486395
XM_036941122.1 mRNA upstream 47668 41739509 ~ 41772444 (+) False LOC110486394
XM_021557960.2 mRNA downstream 51324 41871648 ~ 42008584 (+) False tanc2a
XM_021557961.2 mRNA downstream 51324 41871648 ~ 42008584 (+) False tanc2a
XM_021557962.2 mRNA downstream 51324 41871648 ~ 42008584 (+) False tanc2a
XM_036941127.1 mRNA downstream 51324 41871648 ~ 42008584 (+) False tanc2a
XM_036941128.1 mRNA downstream 51324 41871648 ~ 42008584 (+) True tanc2a
TU1340287 other upstream 25305 41794360 ~ 41794807 (+) True G1175317
TU1340269 other upstream 43132 41773490 ~ 41776980 (+) True LOC110486395
TU1340105 other upstream 279432 41539491 ~ 41540680 (+) True G1175164
TU1339027 other upstream 760175 41057620 ~ 41059937 (+) False LOC110486375
TU1339025 other upstream 761911 41055452 ~ 41058201 (+) False LOC110486375
TU1340321 other downstream 36865 41857189 ~ 41859343 (+) True G1175346
TU1340698 other downstream 105951 41926275 ~ 41926656 (+) True G1175667
TU1341137 other downstream 468767 42289091 ~ 42291866 (+) True G1176084
TU1341375 other downstream 662053 42482377 ~ 42484520 (+) True G1176278
TU1341428 other downstream 905678 42726002 ~ 42730111 (+) True LOC110486430

Expression Profile