RNA id: TU1340852


Basic Information

Item Value
RNA id TU1340852
length 232
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1175813
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41880197 ~ 41880428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctcaatactttgttatataccctttgttggcaatgacagaggtcaaacgttttctgtaagtcttcacaaggttttcacacactgttgctggtattttggcccattcctccatgcagatctcctctagagcagtgatgtcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacatggccccattcattctttcctttacaccgatcagttgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1340848 lncRNA downstream 4613 41875293 ~ 41875584 (-) True G1175809
TU1340846 lncRNA downstream 8144 41871622 ~ 41872053 (-) True G1175807
TU1340596 lncRNA downstream 69695 41810143 ~ 41810502 (-) True G1175568
TU1340595 lncRNA downstream 72724 41807084 ~ 41807473 (-) True G1175567
TU1340592 lncRNA downstream 79662 41800324 ~ 41800535 (-) True G1175564
TU1340853 lncRNA upstream 60 41880488 ~ 41880701 (-) True G1175814
TU1340854 lncRNA upstream 471 41880899 ~ 41881112 (-) True G1175815
TU1340865 lncRNA upstream 18245 41898673 ~ 41898902 (-) True G1175826
TU1340867 lncRNA upstream 20828 41901256 ~ 41901586 (-) True G1175828
TU1340871 lncRNA upstream 25767 41906195 ~ 41906511 (-) True G1175832
XM_021559455.2 mRNA downstream 16388 41862761 ~ 41863809 (-) True LOC110487541
XM_036941126.1 mRNA downstream 22571 41778349 ~ 41857626 (-) False LOC110486396
XM_036941125.1 mRNA downstream 32538 41778349 ~ 41847659 (-) False LOC110486396
XM_021557957.2 mRNA downstream 32539 41778349 ~ 41847658 (-) False LOC110486396
NM_001160565.2 mRNA downstream 147208 41730039 ~ 41732989 (-) True rl23
XM_021557963.2 mRNA upstream 127218 42007646 ~ 42015904 (-) False LOC110486400
XM_021557965.2 mRNA upstream 128186 42008614 ~ 42015906 (-) True LOC110486400
XM_021557985.2 mRNA upstream 329794 42210222 ~ 42291977 (-) False LOC110486406
XM_021557986.2 mRNA upstream 329794 42210222 ~ 42291977 (-) True LOC110486406
XR_005035740.1 mRNA upstream 470100 42350528 ~ 42357245 (-) True LOC118938459
TU1340025 other downstream 588403 41290349 ~ 41291794 (-) True col5a3a
TU1340027 other downstream 590408 41284782 ~ 41289789 (-) False col5a3a
TU1339785 other downstream 1045561 40833903 ~ 40834636 (-) True LOC110486364
TU1339628 other downstream 1422516 40456895 ~ 40457681 (-) True G1174741
TU1339538 other downstream 1563338 40316118 ~ 40316859 (-) True G1174658
TU1340945 other upstream 116886 41997314 ~ 41997637 (-) True G1175904
TU1340947 other upstream 118924 41999352 ~ 42000091 (-) True G1175906
TU1341227 other upstream 447616 42328044 ~ 42328572 (-) True G1176164
TU1341849 other upstream 572731 42453159 ~ 42456946 (-) True LOC110486413
TU1341929 other upstream 589274 42469702 ~ 42471978 (-) True LOC110487542

Expression Profile