RNA id: TU1340955


Basic Information

Item Value
RNA id TU1340955
length 217
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1175912
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42015966 ~ 42016182 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATttgggctgcgtttacacaggcagaccaattctgataGTTTCTTCCACTAtttgatcttttgaccaatcacatccgATCTTTTCACGTCAACTCTTTTTcaaagctgatctgattggtcaaaagaccaattcgTTTAAAAAGTTCAGAATTGGCTTTGTCTGTCTAAACGGGCAGACAAGATCGCACAGGCCATCTTTATCCAATATGCATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1340948 lncRNA downstream 14749 42000198 ~ 42001217 (-) True G1175907
TU1340946 lncRNA downstream 17456 41998279 ~ 41998510 (-) True G1175905
TU1340944 lncRNA downstream 18760 41996941 ~ 41997206 (-) True G1175903
TU1340943 lncRNA downstream 19237 41996063 ~ 41996729 (-) False G1175902
TU1340941 lncRNA downstream 19237 41996491 ~ 41996729 (-) True G1175902
TU1340956 lncRNA upstream 571 42016753 ~ 42017028 (-) True G1175913
TU1340960 lncRNA upstream 5364 42021546 ~ 42021781 (-) True G1175917
TU1340970 lncRNA upstream 20083 42036265 ~ 42036510 (-) True G1175927
TU1341083 lncRNA upstream 187567 42203749 ~ 42206674 (-) True G1176037
TU1341156 lncRNA upstream 201346 42217528 ~ 42217752 (-) True G1176101
XM_021557965.2 mRNA downstream 60 42008614 ~ 42015906 (-) True LOC110486400
XM_021557963.2 mRNA downstream 62 42007646 ~ 42015904 (-) False LOC110486400
XM_021559455.2 mRNA downstream 152157 41862761 ~ 41863809 (-) True LOC110487541
XM_036941126.1 mRNA downstream 158340 41778349 ~ 41857626 (-) False LOC110486396
XM_036941125.1 mRNA downstream 168307 41778349 ~ 41847659 (-) False LOC110486396
XM_021557985.2 mRNA upstream 194040 42210222 ~ 42291977 (-) False LOC110486406
XM_021557986.2 mRNA upstream 194040 42210222 ~ 42291977 (-) True LOC110486406
XR_005035740.1 mRNA upstream 334346 42350528 ~ 42357245 (-) True LOC118938459
XM_036942417.1 mRNA upstream 379620 42395802 ~ 42424907 (-) False LOC110486410
XM_036942420.1 mRNA upstream 379620 42395802 ~ 42424907 (-) False LOC110486410
TU1340947 other downstream 15875 41999352 ~ 42000091 (-) True G1175906
TU1340945 other downstream 18329 41997314 ~ 41997637 (-) True G1175904
TU1340025 other downstream 724172 41290349 ~ 41291794 (-) True col5a3a
TU1340027 other downstream 726177 41284782 ~ 41289789 (-) False col5a3a
TU1339785 other downstream 1181330 40833903 ~ 40834636 (-) True LOC110486364
TU1341227 other upstream 311862 42328044 ~ 42328572 (-) True G1176164
TU1341849 other upstream 436977 42453159 ~ 42456946 (-) True LOC110486413
TU1341929 other upstream 453520 42469702 ~ 42471978 (-) True LOC110487542
TU1341944 other upstream 474376 42490558 ~ 42491172 (-) True G1176749
TU1342090 other upstream 786262 42802444 ~ 42809080 (-) True LOC110486438

Expression Profile