RNA id: TU1341206


Basic Information

Item Value
RNA id TU1341206
length 214
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1176146
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42281131 ~ 42281344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTGATTTATCTTTTGTCCATTGTACCGTGTTCTCATTTCAAGCTAAATGTACAGAATGAAAGAGGAGCATGGTATGTAAAGCACACATTGAGAAATATTTTCAGAACTGTAAGTGAAGGGCCCTTTTGAAAACCAAAGCACCTCTCTGCTTCCAGTTAAATTACATAGCCTAGGCTTCAACAAAATCTCTCTTTCAACGCCTAAAGCCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1341205 lncRNA downstream 3128 42277731 ~ 42278003 (-) True G1176145
TU1341199 lncRNA downstream 7823 42272912 ~ 42273308 (-) True G1176139
TU1341195 lncRNA downstream 8396 42272452 ~ 42272735 (-) True G1176138
TU1341187 lncRNA downstream 18177 42262720 ~ 42262954 (-) True G1176130
TU1341183 lncRNA downstream 24593 42256327 ~ 42256538 (-) True G1176126
TU1341208 lncRNA upstream 3846 42285190 ~ 42285403 (-) True G1176148
TU1341210 lncRNA upstream 5523 42286867 ~ 42287075 (-) True G1176150
TU1341220 lncRNA upstream 34418 42315762 ~ 42315973 (-) True G1176158
TU1341222 lncRNA upstream 35300 42316644 ~ 42322827 (-) True G1176159
TU1341224 lncRNA upstream 35727 42317071 ~ 42323223 (-) True G1176161
XM_021557965.2 mRNA downstream 265225 42008614 ~ 42015906 (-) True LOC110486400
XM_021557963.2 mRNA downstream 265227 42007646 ~ 42015904 (-) False LOC110486400
XM_021559455.2 mRNA downstream 417322 41862761 ~ 41863809 (-) True LOC110487541
XM_036941126.1 mRNA downstream 423505 41778349 ~ 41857626 (-) False LOC110486396
XM_036941125.1 mRNA downstream 433472 41778349 ~ 41847659 (-) False LOC110486396
XR_005035740.1 mRNA upstream 69184 42350528 ~ 42357245 (-) True LOC118938459
XM_036942417.1 mRNA upstream 114458 42395802 ~ 42424907 (-) False LOC110486410
XM_036942420.1 mRNA upstream 114458 42395802 ~ 42424907 (-) False LOC110486410
XM_036942422.1 mRNA upstream 114458 42395802 ~ 42424907 (-) False LOC110486410
XM_036942423.1 mRNA upstream 114458 42395802 ~ 42424907 (-) False LOC110486410
TU1340947 other downstream 281040 41999352 ~ 42000091 (-) True G1175906
TU1340945 other downstream 283494 41997314 ~ 41997637 (-) True G1175904
TU1340025 other downstream 989337 41290349 ~ 41291794 (-) True col5a3a
TU1340027 other downstream 991342 41284782 ~ 41289789 (-) False col5a3a
TU1339785 other downstream 1446495 40833903 ~ 40834636 (-) True LOC110486364
TU1341227 other upstream 46700 42328044 ~ 42328572 (-) True G1176164
TU1341849 other upstream 171815 42453159 ~ 42456946 (-) True LOC110486413
TU1341929 other upstream 188358 42469702 ~ 42471978 (-) True LOC110487542
TU1341944 other upstream 209214 42490558 ~ 42491172 (-) True G1176749
TU1342090 other upstream 521100 42802444 ~ 42809080 (-) True LOC110486438

Expression Profile