RNA id: TU1341227


Basic Information

Item Value
RNA id TU1341227
length 529
RNA type TUCP
GC content 0.54
exon number 1
gene id G1176164
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42328044 ~ 42328572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcacgtttatcgtcgaaggaatgagcgttacaacgaggcctgtactctgcagTGGGATCGAATTGGacgtggagggtctgtcatggtctggggcgttgtgtcacagcatcatcggactgagcttgcgtcattgcaggcaatctcaacgttgtacgttacagggaagacatcctcctccctcatttgtggtacccttcctgcagactcatcctgacatgaccctccagcatgacaatgccaccagccatactgctcgttctgtgcgtgatttcctgcaagacaggaatgtcagtggtctgccatggccagcgaagagcccggatctcaatcccattgagcacgtctgggacctgttggatcggagggtgagggctagagccattccccccagaaatgcccgggaacttgcaggtgccttggtggaagagtggggtaacatctcacagcaagaactggcaaatctggtgcagtccatgaggaggagttgCACTGCAGTACtaaaatgcagctggtggccacaccagatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1341224 lncRNA downstream 4821 42317071 ~ 42323223 (-) True G1176161
TU1341222 lncRNA downstream 5217 42316644 ~ 42322827 (-) True G1176159
TU1341220 lncRNA downstream 12071 42315762 ~ 42315973 (-) True G1176158
TU1341210 lncRNA downstream 40969 42286867 ~ 42287075 (-) True G1176150
TU1341208 lncRNA downstream 42641 42285190 ~ 42285403 (-) True G1176148
TU1341228 lncRNA upstream 176 42328748 ~ 42329046 (-) True G1176165
TU1341233 lncRNA upstream 8784 42337356 ~ 42337594 (-) True G1176170
TU1341851 lncRNA upstream 25752 42354324 ~ 42354523 (-) True G1176678
TU1341861 lncRNA upstream 33521 42362093 ~ 42362331 (-) True G1176687
TU1341870 lncRNA upstream 66214 42394786 ~ 42395694 (-) True G1176693
XM_021557985.2 mRNA downstream 36067 42210222 ~ 42291977 (-) False LOC110486406
XM_021557986.2 mRNA downstream 36067 42210222 ~ 42291977 (-) True LOC110486406
XM_021557965.2 mRNA downstream 312138 42008614 ~ 42015906 (-) True LOC110486400
XM_021557963.2 mRNA downstream 312140 42007646 ~ 42015904 (-) False LOC110486400
XM_021559455.2 mRNA downstream 464235 41862761 ~ 41863809 (-) True LOC110487541
XR_005035740.1 mRNA upstream 21956 42350528 ~ 42357245 (-) True LOC118938459
XM_036942417.1 mRNA upstream 67230 42395802 ~ 42424907 (-) False LOC110486410
XM_036942420.1 mRNA upstream 67230 42395802 ~ 42424907 (-) False LOC110486410
XM_036942422.1 mRNA upstream 67230 42395802 ~ 42424907 (-) False LOC110486410
XM_036942423.1 mRNA upstream 67230 42395802 ~ 42424907 (-) False LOC110486410
TU1340947 other downstream 327953 41999352 ~ 42000091 (-) True G1175906
TU1340945 other downstream 330407 41997314 ~ 41997637 (-) True G1175904
TU1340025 other downstream 1036250 41290349 ~ 41291794 (-) True col5a3a
TU1340027 other downstream 1038255 41284782 ~ 41289789 (-) False col5a3a
TU1339785 other downstream 1493408 40833903 ~ 40834636 (-) True LOC110486364
TU1341849 other upstream 124587 42453159 ~ 42456946 (-) True LOC110486413
TU1341929 other upstream 141130 42469702 ~ 42471978 (-) True LOC110487542
TU1341944 other upstream 161986 42490558 ~ 42491172 (-) True G1176749
TU1342090 other upstream 473872 42802444 ~ 42809080 (-) True LOC110486438
TU1342252 other upstream 676184 43004756 ~ 43007324 (-) True G1177025

Expression Profile