RNA id: TU1341949


Basic Information

Item Value
RNA id TU1341949
length 222
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1176754
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42496397 ~ 42496837 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTgtaattaggcaaactattagttTCAGCAACTatgaaatggcggagcgatttctgcatagtgcaaccTTAAAGTGTAATGGTGAAAGTTGTTGTACTTGCCTCTCCTGCAAAATGAGCTGAGTTCCCATTACTTTTCTCAGATTTGGCCGACTCCTGTGTGCTAATGTAGGCTTTGCGTATCTTCAGGCCCAGTTTGTTAGCTAGCTCCTGTGCCAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1341946 lncRNA downstream 3652 42492416 ~ 42492745 (-) True G1176751
TU1341945 lncRNA downstream 4799 42491339 ~ 42491598 (-) True G1176750
TU1341915 lncRNA downstream 6609 42458514 ~ 42489788 (-) True G1176723
TU1341908 lncRNA downstream 52173 42443915 ~ 42444224 (-) True G1176718
TU1341863 lncRNA downstream 71511 42424179 ~ 42424886 (-) True LOC110486410
TU1341952 lncRNA upstream 17636 42514473 ~ 42514700 (-) True G1176757
TU1341955 lncRNA upstream 22586 42519423 ~ 42519650 (-) True G1176760
TU1341925 lncRNA upstream 39647 42536484 ~ 42540065 (-) True LOC110486417
TU1341969 lncRNA upstream 53040 42549877 ~ 42550622 (-) True G1176774
TU1341970 lncRNA upstream 56356 42553193 ~ 42556101 (-) True G1176775
XM_021558007.2 mRNA downstream 11793 42479024 ~ 42484604 (-) False LOC110486414
XM_021558008.2 mRNA downstream 11793 42479024 ~ 42484604 (-) True LOC110486414
XM_036942451.1 mRNA downstream 12140 42479024 ~ 42484257 (-) False LOC110486414
XM_036942448.1 mRNA downstream 19344 42469256 ~ 42477053 (-) False LOC110487542
XM_021559456.2 mRNA downstream 19349 42469256 ~ 42477048 (-) False LOC110487542
XM_036942461.1 mRNA upstream 39596 42536433 ~ 42543540 (-) False LOC110486417
XM_021558017.2 mRNA upstream 75962 42572799 ~ 42588638 (-) False LOC110486421
XM_021558016.2 mRNA upstream 75962 42572799 ~ 42588640 (-) True LOC110486421
XM_036942467.1 mRNA upstream 113041 42609878 ~ 42612424 (-) True LOC118938457
XM_036942452.1 mRNA upstream 115790 42612627 ~ 42616729 (-) False plbd1
TU1341944 other downstream 5225 42490558 ~ 42491172 (-) True G1176749
TU1341929 other downstream 24419 42469702 ~ 42471978 (-) True LOC110487542
TU1341849 other downstream 39451 42453159 ~ 42456946 (-) True LOC110486413
TU1341227 other downstream 167825 42328044 ~ 42328572 (-) True G1176164
TU1340947 other downstream 496306 41999352 ~ 42000091 (-) True G1175906
TU1342090 other upstream 305607 42802444 ~ 42809080 (-) True LOC110486438
TU1342252 other upstream 507919 43004756 ~ 43007324 (-) True G1177025
TU1342254 other upstream 510542 43007379 ~ 43007758 (-) True G1177027
TU1342190 other upstream 542337 43039174 ~ 43049544 (-) False G1176972
TU1342192 other upstream 542403 43039240 ~ 43049544 (-) False G1176972

Expression Profile