RNA id: TU1341969


Basic Information

Item Value
RNA id TU1341969
length 495
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G1176774
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42549877 ~ 42550622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACTCAGGTTGATCTCAATGACATGGTCGTACTTGCAGCCTTTGTCAGGGACCAAGTCATCCTTATGCTCGTCAGCCAGGGCAGCGATGTCTGAAAGTAGATGGAAAAAGTCTGCACGTCCAGTCTTATTCAGGTAAGTCTTCATGCGGTGATTGTAGGGGAAAACAGAGGTGGTAGCCCCAATTTCAGCTCCCATGTTGCAGATAGTTGCCATACCTTCAACTAGTTCAGGTAAACCTTACTATCTTTAGGCCTCACCGGTGCAGGAAATGGAGTCGACGCCTGGGCCATGGTACTCCACGATGGCGCCAGTGCCCCCCTTTACTGTCAGGATCCCAGCCACCTTCAGGATAACATCCTTGGGAGAAGTCCAGCCCGATAGACTACCTGTCAGCTTCACTCCAATCACCTGATGGGTAGGAGGGAGTTATTACTACATTTGTGAAAGGTCATACATACAGTgatggaaaaaagtatttgatcccctgctgatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1341925 lncRNA downstream 9812 42536484 ~ 42540065 (-) True LOC110486417
TU1341955 lncRNA downstream 30227 42519423 ~ 42519650 (-) True G1176760
TU1341952 lncRNA downstream 35177 42514473 ~ 42514700 (-) True G1176757
TU1341949 lncRNA downstream 53040 42496397 ~ 42496837 (-) True G1176754
TU1341946 lncRNA downstream 57132 42492416 ~ 42492745 (-) True G1176751
TU1341970 lncRNA upstream 2571 42553193 ~ 42556101 (-) True G1176775
TU1342006 lncRNA upstream 41034 42591656 ~ 42592076 (-) True G1176804
TU1342009 lncRNA upstream 42910 42593532 ~ 42593985 (-) True G1176807
TU1342052 lncRNA upstream 150568 42701190 ~ 42701451 (-) True G1176849
TU1342069 lncRNA upstream 197646 42748268 ~ 42752093 (-) True G1176866
XM_036942461.1 mRNA downstream 6337 42536433 ~ 42543540 (-) False LOC110486417
XM_021558007.2 mRNA downstream 65273 42479024 ~ 42484604 (-) False LOC110486414
XM_021558008.2 mRNA downstream 65273 42479024 ~ 42484604 (-) True LOC110486414
XM_036942451.1 mRNA downstream 65620 42479024 ~ 42484257 (-) False LOC110486414
XM_036942448.1 mRNA downstream 72824 42469256 ~ 42477053 (-) False LOC110487542
XM_021558017.2 mRNA upstream 22177 42572799 ~ 42588638 (-) False LOC110486421
XM_021558016.2 mRNA upstream 22177 42572799 ~ 42588640 (-) True LOC110486421
XM_036942467.1 mRNA upstream 59256 42609878 ~ 42612424 (-) True LOC118938457
XM_036942452.1 mRNA upstream 62005 42612627 ~ 42616729 (-) False plbd1
XM_021558019.2 mRNA upstream 62005 42612627 ~ 42616732 (-) True plbd1
TU1341944 other downstream 58705 42490558 ~ 42491172 (-) True G1176749
TU1341929 other downstream 77899 42469702 ~ 42471978 (-) True LOC110487542
TU1341849 other downstream 92931 42453159 ~ 42456946 (-) True LOC110486413
TU1341227 other downstream 221305 42328044 ~ 42328572 (-) True G1176164
TU1340947 other downstream 549786 41999352 ~ 42000091 (-) True G1175906
TU1342090 other upstream 251822 42802444 ~ 42809080 (-) True LOC110486438
TU1342252 other upstream 454134 43004756 ~ 43007324 (-) True G1177025
TU1342254 other upstream 456757 43007379 ~ 43007758 (-) True G1177027
TU1342190 other upstream 488552 43039174 ~ 43049544 (-) False G1176972
TU1342192 other upstream 488618 43039240 ~ 43049544 (-) False G1176972

Expression Profile