RNA id: TU1342140


Basic Information

Item Value
RNA id TU1342140
length 215
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1176927
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42858123 ~ 42858337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCagagcgtcggctggagtggtgtaaagctcagcgccattggactctggagcaatggaTGGAgcatggagtgatgaatcacacttcactatctggcagtccgacggacaaatctgggtttggcggatgccaggagaatgctacctgcctcaatgcatagtgacaactgtaacgtttggtggaggaggaataatggtctggggctgttcttcat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342138 lncRNA downstream 2141 42855711 ~ 42855982 (-) True G1176925
TU1342114 lncRNA downstream 11944 42811237 ~ 42846179 (-) True G1176907
TU1342085 lncRNA downstream 46240 42796550 ~ 42811883 (-) True G1176881
TU1342110 lncRNA downstream 64820 42792501 ~ 42793303 (-) True G1176903
TU1342076 lncRNA downstream 100834 42757065 ~ 42757289 (-) True G1176873
TU1342141 lncRNA upstream 1459 42859796 ~ 42860001 (-) True G1176928
TU1342145 lncRNA upstream 12932 42871269 ~ 42871690 (-) False LOC110486441
TU1342147 lncRNA upstream 16606 42874943 ~ 42875728 (-) True LOC110486441
TU1342255 lncRNA upstream 149453 43007790 ~ 43008069 (-) True G1177028
TU1342256 lncRNA upstream 150703 43009040 ~ 43009373 (-) True G1177029
XM_021558041.2 mRNA downstream 2915 42833554 ~ 42855208 (-) True LOC110486437
XM_021558042.2 mRNA downstream 49003 42801570 ~ 42809120 (-) False LOC110486438
XM_021558035.2 mRNA downstream 70484 42781521 ~ 42787639 (-) True LOC110486434
XM_021558036.2 mRNA downstream 70490 42781521 ~ 42787633 (-) False LOC110486434
XM_021558026.2 mRNA downstream 192109 42655821 ~ 42666014 (-) True LOC110486427
XM_036942463.1 mRNA upstream 8510 42866847 ~ 42869075 (-) True LOC110486439
XM_036942446.1 mRNA upstream 12565 42870902 ~ 42880622 (-) False LOC110486441
XM_021558047.2 mRNA upstream 12565 42870902 ~ 42880838 (-) False LOC110486441
XM_021558056.2 mRNA upstream 135305 42993642 ~ 43003150 (-) False fam234b
XM_021558057.2 mRNA upstream 135305 42993642 ~ 43003150 (-) False fam234b
TU1342090 other downstream 49043 42802444 ~ 42809080 (-) True LOC110486438
TU1341944 other downstream 366951 42490558 ~ 42491172 (-) True G1176749
TU1341929 other downstream 386145 42469702 ~ 42471978 (-) True LOC110487542
TU1341849 other downstream 401177 42453159 ~ 42456946 (-) True LOC110486413
TU1341227 other downstream 529551 42328044 ~ 42328572 (-) True G1176164
TU1342252 other upstream 146419 43004756 ~ 43007324 (-) True G1177025
TU1342254 other upstream 149042 43007379 ~ 43007758 (-) True G1177027
TU1342190 other upstream 180837 43039174 ~ 43049544 (-) False G1176972
TU1342192 other upstream 180903 43039240 ~ 43049544 (-) False G1176972
TU1342194 other upstream 181236 43039573 ~ 43049544 (-) False G1176972

Expression Profile