RNA id: TU1342254



Basic Information


Item Value
RNA id TU1342254
length 380
RNA type TUCP
GC content 0.64
exon number 1
gene id G1177027
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43007379 ~ 43007758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGGAGCGCGTCCTCCATCACACAGCCATCGGATCGGTTCggcgatggaccagatgatggagaggatggagcgatgggagaggagtggtctcccgacATCCACCCCAGCTCCCCCACAGATGACGCAACCCACTCCTCCTCCGGCGGCGTCCAGTCCCAGCGCGTTGCGTCTCGAgccccgagggagtacgatggagcggcggCTGCATGccagggatttttgctccagcttgagctctacctggctaccgtTCGTCCGACTCCCTCGGGTGAAGAGAGTGTGAGCGTCCTCGTCTCCTGCTTGACGGGTAGAGCCCTGGACTGGGCCAACGCTGTCTGGAACGGCCCAGACCCGGCTCGGGACCACTACCCGGAGTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1342147 lncRNA downstream 131651 42874943 ~ 42875728 (-) True LOC110486441
TU1342145 lncRNA downstream 135689 42871269 ~ 42871690 (-) False LOC110486441
TU1342141 lncRNA downstream 147378 42859796 ~ 42860001 (-) True G1176928
TU1342140 lncRNA downstream 149042 42858123 ~ 42858337 (-) True G1176927
TU1342138 lncRNA downstream 151397 42855711 ~ 42855982 (-) True G1176925
TU1342255 lncRNA upstream 32 43007790 ~ 43008069 (-) True G1177028
TU1342256 lncRNA upstream 1282 43009040 ~ 43009373 (-) True G1177029
TU1342261 lncRNA upstream 10333 43018091 ~ 43018343 (-) True G1177033
TU1342204 lncRNA upstream 11319 43019077 ~ 43020973 (-) True LOC110486451
TU1342267 lncRNA upstream 42638 43050396 ~ 43050602 (-) True G1177039
XM_021558058.2 mRNA downstream 4226 42993642 ~ 43003153 (-) True fam234b
XM_021558056.2 mRNA downstream 4229 42993642 ~ 43003150 (-) False fam234b
XM_021558057.2 mRNA downstream 4229 42993642 ~ 43003150 (-) False fam234b
XM_036942450.1 mRNA downstream 4229 42993642 ~ 43003150 (-) False fam234b
XM_021558047.2 mRNA downstream 126541 42870902 ~ 42880838 (-) False LOC110486441
XR_005035772.1 mRNA upstream 3742 43011500 ~ 43011654 (-) True LOC118938563
XM_021558069.2 mRNA upstream 13189 43020947 ~ 43025709 (-) False LOC110486451
XM_021558073.2 mRNA upstream 24752 43032510 ~ 43039209 (-) True LOC110486454
XM_021558074.2 mRNA upstream 31736 43039494 ~ 43049749 (-) True fmc1
XR_005035547.1 mRNA upstream 45911 43053669 ~ 43064650 (-) False LOC118938293
TU1342252 other downstream 55 43004756 ~ 43007324 (-) True G1177025
TU1342090 other downstream 198299 42802444 ~ 42809080 (-) True LOC110486438
TU1341944 other downstream 516207 42490558 ~ 42491172 (-) True G1176749
TU1341929 other downstream 535401 42469702 ~ 42471978 (-) True LOC110487542
TU1341849 other downstream 550433 42453159 ~ 42456946 (-) True LOC110486413
TU1342190 other upstream 31416 43039174 ~ 43049544 (-) False G1176972
TU1342192 other upstream 31482 43039240 ~ 43049544 (-) False G1176972
TU1342194 other upstream 31815 43039573 ~ 43049544 (-) False G1176972
TU1342193 other upstream 31982 43039740 ~ 43049544 (-) True G1176972
TU1342276 other upstream 51672 43059430 ~ 43076353 (-) True G1177047

Expression Profile