RNA id: TU1342255


Basic Information

Item Value
RNA id TU1342255
length 280
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1177028
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43007790 ~ 43008069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTGTTGTGGGCTATTTAAACCTGGTAGGCCCGccggcttttgtgcgggcttgtttttctgttcatggtgtgtgGATTATTGTGGATTCCGTTTTTCCGGACAGTTTCGTCCTGTTTGTTGGACTGTGTATTTCAGCGCCCTTATGTGTGACTTGACCGTTACTCTGTTCTTGGAATAAAGATCCACGTTTTGAAccaccctgctctctgcgcctgactcctccacccactactcctagaagcctTTATAGAAACCCGCACCAaaccatggagtcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342147 lncRNA downstream 132062 42874943 ~ 42875728 (-) True LOC110486441
TU1342145 lncRNA downstream 136100 42871269 ~ 42871690 (-) False LOC110486441
TU1342141 lncRNA downstream 147789 42859796 ~ 42860001 (-) True G1176928
TU1342140 lncRNA downstream 149453 42858123 ~ 42858337 (-) True G1176927
TU1342138 lncRNA downstream 151808 42855711 ~ 42855982 (-) True G1176925
TU1342256 lncRNA upstream 971 43009040 ~ 43009373 (-) True G1177029
TU1342261 lncRNA upstream 10022 43018091 ~ 43018343 (-) True G1177033
TU1342204 lncRNA upstream 11008 43019077 ~ 43020973 (-) True LOC110486451
TU1342267 lncRNA upstream 42327 43050396 ~ 43050602 (-) True G1177039
TU1342268 lncRNA upstream 43422 43051491 ~ 43051871 (-) True G1177040
XM_021558058.2 mRNA downstream 4637 42993642 ~ 43003153 (-) True fam234b
XM_021558056.2 mRNA downstream 4640 42993642 ~ 43003150 (-) False fam234b
XM_021558057.2 mRNA downstream 4640 42993642 ~ 43003150 (-) False fam234b
XM_036942450.1 mRNA downstream 4640 42993642 ~ 43003150 (-) False fam234b
XM_021558047.2 mRNA downstream 126952 42870902 ~ 42880838 (-) False LOC110486441
XR_005035772.1 mRNA upstream 3431 43011500 ~ 43011654 (-) True LOC118938563
XM_021558069.2 mRNA upstream 12878 43020947 ~ 43025709 (-) False LOC110486451
XM_021558073.2 mRNA upstream 24441 43032510 ~ 43039209 (-) True LOC110486454
XM_021558074.2 mRNA upstream 31425 43039494 ~ 43049749 (-) True fmc1
XR_005035547.1 mRNA upstream 45600 43053669 ~ 43064650 (-) False LOC118938293
TU1342254 other downstream 32 43007379 ~ 43007758 (-) True G1177027
TU1342252 other downstream 466 43004756 ~ 43007324 (-) True G1177025
TU1342090 other downstream 198710 42802444 ~ 42809080 (-) True LOC110486438
TU1341944 other downstream 516618 42490558 ~ 42491172 (-) True G1176749
TU1341929 other downstream 535812 42469702 ~ 42471978 (-) True LOC110487542
TU1342190 other upstream 31105 43039174 ~ 43049544 (-) False G1176972
TU1342192 other upstream 31171 43039240 ~ 43049544 (-) False G1176972
TU1342194 other upstream 31504 43039573 ~ 43049544 (-) False G1176972
TU1342193 other upstream 31671 43039740 ~ 43049544 (-) True G1176972
TU1342276 other upstream 51361 43059430 ~ 43076353 (-) True G1177047

Expression Profile