RNA id: TU1342419


Basic Information

Item Value
RNA id TU1342419
length 2727
RNA type TUCP
GC content 0.44
exon number 5
gene id G1177175
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43352501 ~ 43362354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAAACGAAGGCCGGTTCCTTGTGTTCACTTTGCTCTTGGACTGACATGCAGCAGTAGCTCTCATTTCGAGACAGAAGCTCCTTGGAACATTTGTGAAATTAGaccTCAGCAGAAATGAACACAGCTCCCCCTGCAGGAAGTGCCCTGGCAACGCCCGCTGGGACAGCTGGCCCCACCACCCCCAAGAAGGGACCCCCCAAGTTCAAGCAGAGGCAAACCCGTACATTCAAGAGCAAGGCCCCCAAGCCTGGCCAGAAAGGATTTGGTGATGACATCCCAGGCATGGAGGGTCTTGGCACAGaCATAGCAGTGGTCTGCCCATGGGAGGCTTACGGCGACATGGAGCTCAGTGATCTGGCCAAATATGGAATCATCTAAGACTACTGCCTCCTGCCTTCCCTTAACCTCTACGCTCTTGACCCTTTCCTTCTGTGTTAGTCTGGCGCGCCACCATAAGGCGACTGGCCATCCCCCTAAAGTCATCTCGTCACTCCTCGCTGTTCTTAAGTCTGTTGTGGTCAGGCGCTGCGGCCTGAAAGACCACATACGATAGGCAGACGGAACACTGAactgtttatttttattattatcatataatagtattatactgtattttatacaggACATAAGAGATACTTGATGTGATAAGACAAGACCACCCCCACCCCTTTCGACATTAGCCGACCTCGGCTcccccttccctctatccttttGTAACCACTCAGATCCCGTTAGTCCCCCAATTCCTCTGTGAACCATCAACCACAGAATTGGACGCAAGCAAAAGACTAGCTATGACTAGCTTGTACTTGCTTAAAGTCTACCACAGAACTGTAAATATGTCTCTGTTTCCAATGCAACCTCTATCTTCGTTACCCTCCCTTTTTTACCCCAATCTCTTTTTTGCATTGTGTTTTTTACTTGCTGTTGATAAGGCGTGCTACTGTGAACACACAGGAAACGAAAGGGATGAGACCAGGGAGGAGGGTGTGTGATGCTTTGTCATAGATCATTATGGTGAAGGCATTCCCTGTTATCCCTGTGGTGCTACCACACCGCCCCCTTCTTAGTGTACGGTATGCCACcaaacataatataaatatattgatgtgttacaaacacaaacacattcatatgacggaatgtgtatgtgtgattgAATGTCCTGATAGATACATTAaagtttttattttcaatacacaGGTTGTCCTTTGCTCTTCTGTCATCTCTGAGAAAATATGAGAAAATACAACCCCTTCCATGATGGGTATCTGAGTCCCTGAAGCTTATGGAAATCCTATACTGTGAACAGACAAACTATCCCGGcctttgtgtctgtctctatgAAAGCTTCAGTGTTGATCCACTCTGCTCCATTTACACACACCTTACAGAACGTCCTTGCCTGTACAGACTTGATCCCAGGAGCTCAGCACGGGCTTGTTCATACAGAGACCCATTGGAAGGCATTCTCCCTCCCTGAGGGGTATCAGTGTTGTGGGGTTATGTCTAAGTGGTTACTGTTAGTCTCAGGGACAGTTAGATGAGTCAGTTGTGTTTTTcagcctcctccttcctcctcctcggttgtcactagttactacAGCCACAAAGTAATAAACCAAGTCCATTTCTACAAAAAtgagattttaaacctaaccttaatcctaaccacACTTgtgtctaaacctaaccttaaaataaaaccaaaaagctcatttttgtTTGAATGAATAGCCCATTTTGAGTTTGTGGTTGtagtaactagtggaaaccctcCCCCTCACCTGTAACCTCTCTCTTTTTAACATAGCAACCAGCAGTGTGATTATTTATGATGACATGGCATTCAGATCCTTGCCTATGCATATCATTTCCAATCATGTGGTCAACTCTCATAGATAGATGTTCAACCTTAGCATTTCtttaatactgtgtgtgtgtctgtgcgtgcgtgcgtgcttgcgtgcgtgtgtgtgtgtgtgtgtgtcagtgcctGTTCCATAGCCTCCAGGGATTCGAGCCCCACCTATACTTTGCTGTTTTGTGAGATAGACTAAGAAAAAGAGAGTGCGAGGAGGGGAAGTCAGGGGTGGGTCAGTCCAAACGTCTCTCCTATCGCTTCACCAGTAGATGTAAATGTGggtgaggtaaaaaaaaaaaacaccatctTTCGTTTCCAAAATAATttactccctctctcattcctctcttcctgctttccctccctccctcttgcacTGCTTGTGAAAGATATGGGAACATCCTTGAGTTAGGAGGCACGTTCATACATAGATGACTGTCTACTGATGCATCAGCTGAGAGTTTATTGCAAATCTCAAGTGGAACTACAAGTAGGATCAGAAATAACCACCGACCACAGAGGTGGatgcactgaagcctcaggataAAGGGTAAATAATTAATGTTACTATTCTCTGTTAGTTTGAAAGTTGTAGCTTGAAAGGAGGTATACCCTACCAATTTGTTTGCCACCTGTTTTGCCACAGGAAGAGTTTGTTGTTTTAAAGTAAAAATGTTGCTCACAAGATTAAAAGTAAGCAGTTGAGGCAGCGATGCCTTCATGTCTCCTGTTGTTGGATGACAATGAATCATTATTGTTTAGACTGTTGTTACTGTCAACCAATTCAACAACCCAATCAATGGAAAAACATTCAAAACAATTGTTTTATTCAATATTTGTTTATGTTAGGTAACAAATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1342414 lncRNA downstream 71861 43280439 ~ 43280640 (-) True G1177170
TU1342406 lncRNA downstream 78260 43274004 ~ 43274241 (-) True G1177162
TU1342405 lncRNA downstream 78555 43273708 ~ 43273946 (-) True G1177161
TU1342394 lncRNA downstream 96788 43255408 ~ 43255713 (-) True G1177151
TU1342357 lncRNA downstream 133134 43213117 ~ 43219367 (-) True G1177120
TU1342498 lncRNA upstream 45730 43407998 ~ 43408371 (-) True G1177237
TU1342808 lncRNA upstream 109138 43471406 ~ 43472241 (-) True G1177507
TU1342810 lncRNA upstream 110375 43472643 ~ 43473143 (-) True G1177509
TU1342816 lncRNA upstream 117746 43480014 ~ 43562861 (-) False G1177513
TU1342817 lncRNA upstream 117746 43480014 ~ 43523551 (-) False G1177513
XM_021558082.2 mRNA downstream 54652 43285756 ~ 43297849 (-) True LOC110486460
XM_036941144.1 mRNA downstream 80447 43265779 ~ 43272054 (-) True LOC110486458
XM_036941143.1 mRNA downstream 80834 43265779 ~ 43271667 (-) False LOC110486458
XR_005035548.1 mRNA downstream 286614 43053669 ~ 43065887 (-) False LOC118938293
XR_005035549.1 mRNA downstream 286855 43053669 ~ 43065646 (-) False LOC118938293
XM_036941165.1 mRNA upstream 123414 43485682 ~ 43487100 (-) True LOC118938297
XR_005035555.1 mRNA upstream 124834 43487102 ~ 43489593 (-) True LOC118938302
XR_005035557.1 mRNA upstream 137532 43499800 ~ 43500729 (-) True LOC118938304
XM_036939745.1 mRNA upstream 138546 43500814 ~ 43502295 (-) True LOC118938072
XM_036939746.1 mRNA upstream 153154 43515422 ~ 43518265 (-) True LOC110486469
TU1342276 other downstream 276148 43059430 ~ 43076353 (-) True G1177047
TU1342190 other downstream 302957 43039174 ~ 43049544 (-) False G1176972
TU1342192 other downstream 302957 43039240 ~ 43049544 (-) False G1176972
TU1342194 other downstream 302957 43039573 ~ 43049544 (-) False G1176972
TU1342193 other downstream 302957 43039740 ~ 43049544 (-) True G1176972
TU1342499 other upstream 51891 43414159 ~ 43415103 (-) True G1177238
TU1342871 other upstream 239095 43601363 ~ 43616008 (-) False G1177552
TU1343088 other upstream 611271 43973539 ~ 43974057 (-) True G1177709
TU1343092 other upstream 614879 43977147 ~ 43983567 (-) True zgc:158403
TU1343292 other upstream 665044 44027312 ~ 44028985 (-) True epor

Expression Profile