RNA id: TU1343437


Basic Information

Item Value
RNA id TU1343437
length 251
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1178005
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44232781 ~ 44233031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggagtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctggttctttcagcatgacaatgatcccaaacacaccgc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343433 lncRNA downstream 6248 44226060 ~ 44226533 (-) True G1178001
TU1343426 lncRNA downstream 17696 44214374 ~ 44215085 (-) True G1177994
TU1343413 lncRNA downstream 21868 44210587 ~ 44210913 (-) True G1177981
TU1343420 lncRNA downstream 26105 44206459 ~ 44206676 (-) True G1177988
TU1343419 lncRNA downstream 26338 44206082 ~ 44206443 (-) True G1177987
TU1343438 lncRNA upstream 599 44233630 ~ 44272916 (-) True G1178006
TU1343466 lncRNA upstream 40030 44273061 ~ 44273273 (-) True G1178030
TU1343471 lncRNA upstream 45339 44278370 ~ 44278812 (-) True G1178035
TU1343475 lncRNA upstream 50479 44283510 ~ 44283713 (-) True G1178039
TU1343694 lncRNA upstream 110388 44343419 ~ 44343661 (-) True G1178224
XM_021556249.2 mRNA downstream 8209 44222533 ~ 44224572 (-) True LOC110485183
XM_036941202.1 mRNA downstream 63631 44121355 ~ 44169150 (-) False LOC110486489
XM_036941203.1 mRNA downstream 63631 44121355 ~ 44169150 (-) True LOC110486489
XM_036941201.1 mRNA downstream 63633 44121355 ~ 44169148 (-) False LOC110486489
XR_005035560.1 mRNA downstream 114538 44116040 ~ 44118243 (-) False LOC110486490
XM_036941205.1 mRNA upstream 62545 44295576 ~ 44311575 (-) True LOC110486496
XM_021558129.2 mRNA upstream 86970 44320001 ~ 44330723 (-) False LOC110486497
XM_021558127.2 mRNA upstream 88154 44321185 ~ 44330732 (-) False LOC110486497
XM_021558126.2 mRNA upstream 88154 44321185 ~ 44342927 (-) True LOC110486497
XM_021558132.2 mRNA upstream 127383 44360414 ~ 44370469 (-) True LOC110486499
TU1343292 other downstream 203796 44027312 ~ 44028985 (-) True epor
TU1343092 other downstream 249214 43977147 ~ 43983567 (-) True zgc:158403
TU1343088 other downstream 258724 43973539 ~ 43974057 (-) True G1177709
TU1342871 other downstream 616773 43601363 ~ 43616008 (-) False G1177552
TU1342499 other downstream 817678 43414159 ~ 43415103 (-) True G1177238
TU1343757 other upstream 229923 44462954 ~ 44463226 (-) True G1178281
TU1343762 other upstream 250591 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other upstream 280405 44513436 ~ 44530531 (-) True G1178286
TU1344299 other upstream 420041 44653072 ~ 44653468 (-) True G1178763
TU1344306 other upstream 495545 44728576 ~ 44731351 (-) True G1178765

Expression Profile