RNA id: TU1343909


Basic Information

Item Value
RNA id TU1343909
length 1253
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1178410
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44783178 ~ 44784430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCACATTACATAAAAATAACTGACACACGCTTGAGAGTAACAAAATCACCAGTGTTACAGGAATTGGTTTTTCCATTTTATATTTAGAGGTTTGAGGTTAGCAAGTGGGGCGCATCGATTGGTGTCACCTTGTTAGTTAGTCTGtattacacctgtgctggttggtcATTTCATTAGaaggaaggtgtttcacctgtgctatATATgcacaaaggtatgtggacaccccttcaaattagtggattcagccatTTCAGGTTTATAAAGGTTTATTAAGTTGAGCACAtagccatgaaatctccatagacaaacattggcagtagaatggcctaacGGAAGTGCTCagggactttcaacgtggcactgtcataggacgctacctttccaacaagtctaaGGCGGCCAAATCTGGGTTTCACGGATACCAGGATAACGCTACCTGCCCTAATACATAGTGCTaactgtacagtttggtggaagaggaataatggtcttgggctgttttttCCTGGTTCGGGCCCctgagttccagtgaagggaaatcttaacgctacagcatacaatgatattctagatgattcagtgcttccaactttgtggcaacagtttggggacggccctttcccgtttcagcatgacaatgcccctgtgcacaaagtgaggtccatacagaaatggtttgttgagatcagtgtggaagaatcTGGCCTGCCTGCagtctgacctcaaccccatcgaacacctttgggatgaattggaacgcagactgcgagccaggtcgaatcgcccaacctcactaatgctcgtggctaaATGGAAGCCAATCCATGCAGcaaatgttccaatatctagtggaaagccttcctagaagagtggaggctgttatagcaaaagggggaccaagtccatattaatgcccatgattttgtaatgagatgtttgacgagcaggtgtccacagtttgtcatgtagtgtatattgccAGTGCCAACATTTCATACTGCAAATGTTGGTACTGGCATATATGTCTAACAGACACTGTTAATTTCCAATATATTTAAGCAGTGATTTACCATCACCAAATTGACAGGCTAAAATCAACACCAACAAGCGAGGGAGAGGAATCACTAGCACTGCTAGGCCGTCCTGAGTTCAACGAGTCGGCGTTTCAACAATGTAACAGCATGTCCAATTAGTGATGGTAAATACCCATTGTGATATGTCcattacacatacagtgccttgcgaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343908 lncRNA upstream 552 44782400 ~ 44782626 (+) True G1178409
TU1343862 lncRNA upstream 98098 44669238 ~ 44685080 (+) True G1178364
TU1343860 lncRNA upstream 115256 44667613 ~ 44667922 (+) True G1178362
TU1343858 lncRNA upstream 117727 44664952 ~ 44665451 (+) True G1178360
TU1343856 lncRNA upstream 126573 44655345 ~ 44656605 (+) True G1178358
TU1343910 lncRNA downstream 973 44785403 ~ 44785611 (+) True G1178411
TU1343945 lncRNA downstream 52200 44836630 ~ 44836912 (+) True G1178444
TU1343946 lncRNA downstream 52587 44837017 ~ 44837250 (+) True G1178445
TU1343949 lncRNA downstream 55518 44839948 ~ 44840170 (+) True G1178448
TU1343971 lncRNA downstream 94245 44878675 ~ 44890333 (+) False LOC110485188
XM_036941235.1 mRNA upstream 10854 44760430 ~ 44772324 (+) False LOC110486516
XM_021558186.2 mRNA downstream 60721 44845151 ~ 44847008 (+) True LOC110486520
XM_036941242.1 mRNA downstream 94284 44878714 ~ 44943951 (+) False LOC110485188
XM_036941246.1 mRNA downstream 160019 44944449 ~ 44956000 (+) False LOC110486523
XM_036941244.1 mRNA downstream 160021 44944451 ~ 44956000 (+) False LOC110486523
XM_036941245.1 mRNA downstream 160022 44944452 ~ 44956000 (+) False LOC110486523
TU1343861 other upstream 114719 44668068 ~ 44668459 (+) True G1178363
TU1343210 other upstream 577608 44174384 ~ 44205570 (+) False LOC110486491
TU1343143 other upstream 661256 44118878 ~ 44121922 (+) True G1177750
TU1341841 other upstream 1375236 43406168 ~ 43407942 (+) True LOC110486465
TU1341801 other upstream 1380898 43397749 ~ 43402280 (+) True LOC110486464
TU1343925 other downstream 75439 44859869 ~ 44864183 (+) True G1178425
TU1343969 other downstream 135933 44920363 ~ 44926317 (+) True LOC110485188
TU1343973 other downstream 182938 44967368 ~ 44969719 (+) True LOC110486526
TU1344763 other downstream 527900 45312330 ~ 45313033 (+) True G1179156
TU1344997 other downstream 678158 45462588 ~ 45462943 (+) True G1179362

Expression Profile