RNA id: TU1344394


Basic Information

Item Value
RNA id TU1344394
length 809
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1178831
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44783437 ~ 44784245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGCTTAAATATATTGGAAATTAACAGTGTCTGTTAGACATATATGCCAGTACCAACATTTGCAGTATGAAATGTTGGCACTggcaatatacactacatgacaaactgtggacacctgctcgtcaaacatctcattacaaaatcatgggcattaatatggacttggtcccccttttgctataacagcctccactcttctaggaaggctttccactagatattggaacatttgCTGCATGGATTGGCTTCCATttagccacgagcattagtgaggttgggcgattcgacctggctcgcagtctgcgttccaattcatcccaaaggtgttcgatggggttgaggtcagactGCAGGCAGGCCAgattcttccacactgatctcaacaaaccatttctgtatggacctcactttgtgcacaggggcattgtcatgctgaaacgggaaagggccgtccccaaactgttgccacaaagttggaagcactgaatcatctagaatatcattgtatgctgtagcgttaagatttcccttcactggaactcagGGGCCCGAACCAGGaaaaaacagcccaagaccattattcctcttccaccaaactgtacagttAGCACTATGTATTAGGGCAGGTAGCGTTATCCTGGTATCCGTGAAACCCAGATTTGGCCGCCttagacttgttggaaaggtagcgtcctatgacagtgccacgttgaaagtccctGAGCACTTCCgttaggccattctactgccaatgtttgtctatggagatttcatggctaTGTGCTCAACTTAATAAACCTTTATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344383 lncRNA downstream 8832 44772605 ~ 44774605 (-) True LOC110486518
TU1344315 lncRNA downstream 42372 44740654 ~ 44741065 (-) True G1178771
TU1344305 lncRNA downstream 52086 44725639 ~ 44731351 (-) False G1178765
TU1344308 lncRNA downstream 59426 44723063 ~ 44724011 (-) True G1178767
TU1344319 lncRNA downstream 117331 44665896 ~ 44666106 (-) True si:ch211-106h11.3
TU1344396 lncRNA upstream 1791 44786036 ~ 44831509 (-) True G1178833
TU1344430 lncRNA upstream 50566 44834811 ~ 44835134 (-) True G1178867
TU1344426 lncRNA upstream 53335 44837580 ~ 44837815 (-) True G1178863
TU1344425 lncRNA upstream 62502 44846747 ~ 44847006 (-) True G1178862
TU1344436 lncRNA upstream 63798 44848043 ~ 44848333 (-) True G1178873
XM_021558181.2 mRNA downstream 8803 44772602 ~ 44774634 (-) False LOC110486518
XM_021558161.2 mRNA downstream 101533 44677879 ~ 44681904 (-) True LOC110486512
XM_036941228.1 mRNA downstream 110486 44665763 ~ 44672951 (-) False si:ch211-106h11.3
XM_036939756.1 mRNA downstream 134405 44644651 ~ 44649032 (-) True LOC118938082
XM_036942625.1 mRNA downstream 139464 44642428 ~ 44643973 (-) True LOC118938554
XM_021558185.2 mRNA upstream 2690 44786935 ~ 44803223 (-) False hook2
XM_021558183.2 mRNA upstream 2690 44786935 ~ 44803226 (-) False hook2
XM_021558184.2 mRNA upstream 2690 44786935 ~ 44803227 (-) True hook2
NM_001165188.1 mRNA upstream 66333 44850578 ~ 44852673 (-) False tdx
XM_021558188.2 mRNA upstream 72692 44856937 ~ 44864226 (-) True LOC110486521
TU1344306 other downstream 52086 44728576 ~ 44731351 (-) True G1178765
TU1344299 other downstream 129969 44653072 ~ 44653468 (-) True G1178763
TU1343762 other downstream 237953 44483622 ~ 44545484 (-) True LOC110485184
TU1343763 other downstream 252906 44513436 ~ 44530531 (-) True G1178286
TU1343757 other downstream 320211 44462954 ~ 44463226 (-) True G1178281
TU1344529 other upstream 184965 44969210 ~ 44981200 (-) True G1178958
TU1344579 other upstream 242270 45026515 ~ 45028613 (-) True G1178982
TU1344593 other upstream 267331 45051576 ~ 45052024 (-) True G1178996
TU1344629 other upstream 301264 45085509 ~ 45087130 (-) True il-8
TU1344653 other upstream 399215 45183460 ~ 45193305 (-) True zgc:171844

Expression Profile