RNA id: TU1343945


Basic Information

Item Value
RNA id TU1343945
length 283
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1178444
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44836630 ~ 44836912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAGTTCAAGCTGTTTGGGTCAACAGCTTGGACTTGAGAAAAACACCATTGTAACCATCatgtgatgttgatgatgatgatgataatgatgatggatGGTTCTATTTATAGCCTCACAACACTGACCACAGAAGACAACAACAGCATGAGAGGCCCCATTGTGTCCCAATGGGAGAATCACCCACTCAGTCAAGAGTCAGCCGAGAGGGCATTCACAACCCTCATCCAACCAAGCatgtctttctttccctctctcgtccctctctctgaTTGGCACAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1343910 lncRNA upstream 51019 44785403 ~ 44785611 (+) True G1178411
TU1343909 lncRNA upstream 52200 44783178 ~ 44784430 (+) True G1178410
TU1343908 lncRNA upstream 54004 44782400 ~ 44782626 (+) True G1178409
TU1343862 lncRNA upstream 151550 44669238 ~ 44685080 (+) True G1178364
TU1343860 lncRNA upstream 168708 44667613 ~ 44667922 (+) True G1178362
TU1343946 lncRNA downstream 105 44837017 ~ 44837250 (+) True G1178445
TU1343949 lncRNA downstream 3036 44839948 ~ 44840170 (+) True G1178448
TU1343971 lncRNA downstream 41763 44878675 ~ 44890333 (+) False LOC110485188
TU1344002 lncRNA downstream 54378 44891290 ~ 44891571 (+) True G1178491
TU1344010 lncRNA downstream 63419 44900331 ~ 44900634 (+) True G1178499
XM_036941235.1 mRNA upstream 64306 44760430 ~ 44772324 (+) False LOC110486516
XM_021558186.2 mRNA downstream 8239 44845151 ~ 44847008 (+) True LOC110486520
XM_036941242.1 mRNA downstream 41802 44878714 ~ 44943951 (+) False LOC110485188
XM_036941246.1 mRNA downstream 107537 44944449 ~ 44956000 (+) False LOC110486523
XM_036941244.1 mRNA downstream 107539 44944451 ~ 44956000 (+) False LOC110486523
XM_036941245.1 mRNA downstream 107540 44944452 ~ 44956000 (+) False LOC110486523
TU1343861 other upstream 168171 44668068 ~ 44668459 (+) True G1178363
TU1343210 other upstream 631060 44174384 ~ 44205570 (+) False LOC110486491
TU1343143 other upstream 714708 44118878 ~ 44121922 (+) True G1177750
TU1341841 other upstream 1428688 43406168 ~ 43407942 (+) True LOC110486465
TU1341801 other upstream 1434350 43397749 ~ 43402280 (+) True LOC110486464
TU1343925 other downstream 22957 44859869 ~ 44864183 (+) True G1178425
TU1343969 other downstream 83451 44920363 ~ 44926317 (+) True LOC110485188
TU1343973 other downstream 130456 44967368 ~ 44969719 (+) True LOC110486526
TU1344763 other downstream 475418 45312330 ~ 45313033 (+) True G1179156
TU1344997 other downstream 625676 45462588 ~ 45462943 (+) True G1179362

Expression Profile