RNA id: TU1344593


Basic Information

Item Value
RNA id TU1344593
length 449
RNA type TUCP
GC content 0.42
exon number 1
gene id G1178996
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45051576 ~ 45052024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgcaacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaatgttatgtttggcgtaaaagcaacacagctgaacacaccatccccattgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgattggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344577 lncRNA downstream 29829 45020298 ~ 45021747 (-) True G1178980
TU1344569 lncRNA downstream 36831 45012785 ~ 45014745 (-) True G1178974
TU1344551 lncRNA downstream 55573 44995244 ~ 44996003 (-) False G1178962
TU1344662 lncRNA upstream 94440 45146464 ~ 45146663 (-) True G1179064
TU1344667 lncRNA upstream 122915 45174939 ~ 45175366 (-) True G1179069
TU1344672 lncRNA upstream 127337 45179361 ~ 45179568 (-) True G1179074
TU1344654 lncRNA upstream 129400 45181424 ~ 45181741 (-) True G1179056
TU1344679 lncRNA upstream 149348 45201372 ~ 45201600 (-) True pik3r6b
XM_021558200.2 mRNA downstream 17171 45029764 ~ 45034405 (-) True LOC110486528
XM_021558191.2 mRNA downstream 91916 44955574 ~ 44959660 (-) True LOC110486524
XM_021558188.2 mRNA downstream 187350 44856937 ~ 44864226 (-) True LOC110486521
NM_001165188.1 mRNA downstream 198903 44850578 ~ 44852673 (-) False tdx
XM_021558184.2 mRNA downstream 248349 44786935 ~ 44803227 (-) True hook2
NM_001124362.1 mRNA upstream 33245 45085269 ~ 45087090 (-) False il-8
XM_021558206.2 mRNA upstream 81005 45133029 ~ 45135645 (-) True LOC110486532
XM_036941252.1 mRNA upstream 84732 45136756 ~ 45142885 (-) False LOC110486530
XM_021558204.2 mRNA upstream 84732 45136756 ~ 45143108 (-) False LOC110486530
XM_036941251.1 mRNA upstream 84732 45136756 ~ 45143108 (-) True LOC110486530
TU1344579 other downstream 22963 45026515 ~ 45028613 (-) True G1178982
TU1344529 other downstream 70376 44969210 ~ 44981200 (-) True G1178958
TU1344306 other downstream 320225 44728576 ~ 44731351 (-) True G1178765
TU1344299 other downstream 398108 44653072 ~ 44653468 (-) True G1178763
TU1343762 other downstream 506092 44483622 ~ 44545484 (-) True LOC110485184
TU1344629 other upstream 33485 45085509 ~ 45087130 (-) True il-8
TU1344653 other upstream 131436 45183460 ~ 45193305 (-) True zgc:171844
TU1345280 other upstream 477412 45529436 ~ 45530114 (-) True G1179619
TU1345282 other upstream 479834 45531858 ~ 45532662 (-) True G1179621
TU1346367 other upstream 1461433 46513457 ~ 46535645 (-) True LOC110486586

Expression Profile