RNA id: TU1344826


Basic Information

Item Value
RNA id TU1344826
length 1747
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G1179214
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45453959 ~ 45455862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggacttgcacaattggtggctgactaaatacttttctgccccactgtacatgacgATCTATTACATTAAATGAAGATCATTGAGTAACTTTTCCTATAGAGTGCTGTAATGCATTTTAATTGTCAGCCATAGGGTACATGCCAATTCAGATATATGCACATTCTGTGTATGTTCTAGTCAGTGCATATTTCCCAGCAACCATGGATGGAAACCTATGATGTGTGTTTTATGTTACATGTGTTTGAGCTTACATCAACTGTATATGAACATATGTAGTAGTAATACGGATAATACCAACACAATGGCATACAGTGCTTCTGTAAAGGGAAAAACACTATTCGAGTAAATGTATTTATCTATTAGATTTCTGAGTTACTTAATTACTTAGGCCCATCGCCCCATGAGAAGCATAGGCCATCAACTGGCCATCAACTGAGTTGACTTCATGTATCTGAAATTATCTAGAATTTAAACCCAATGAAATTATACAATCATTTACTATTCTCCTAAACTATAATGTTAATGTGTAGGACATATACTGTATGATTGTGTTAGCAGACATACAGTAGTAGCTATGCAATATACTGGATGCCCCATATGGTGTCCCCATATGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCGTCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACTCTACACCGTCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACTCTACACCGTCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCGTCAACATTGTCTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACATTGTCTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACCATCATGACAAATTGGTTGATGACACGACACCATCAACATTGTCTGATGACACGACACCATCAAAATTGTCTGATGACACTAGCTCAAATGTTTTGCCTTTATTTTTTATTCGCTTGTTCTCATCAATTTGGTTTCTGCAACCTTATTTAACTTTGTTTACCAAAATGAGCACTTGTTTTGGAAATGACCCTAAATGAAGGATGCTTTCCTTGGGAAGGCATGGGTTGACTATATTTTATATGCAACTTTTGTAAAAGTCTACATTTTATACctgatttgtaattatgtaaaTGAAGGCTCCAGATGATCAAATCAGATAATGTATGCTTCTGATTAGAGAGCAACGTCAGGATAAAGCACAAGTGGACTTAACATATATATTGTACCTGCCTCTAATATCTGCTTATTACCATACtggaatttatttgaattgcaaaTTAAACACAGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344878 lncRNA upstream 27568 45418000 ~ 45426391 (+) True G1179259
TU1344785 lncRNA upstream 101054 45352458 ~ 45352905 (+) True G1179178
TU1344758 lncRNA upstream 110882 45300753 ~ 45343077 (+) True G1179151
TU1344735 lncRNA upstream 178321 45275408 ~ 45275638 (+) True G1179130
TU1344173 lncRNA upstream 185999 45267330 ~ 45267960 (+) True LOC110486541
TU1344985 lncRNA downstream 672 45456534 ~ 45456776 (+) True G1179350
TU1344987 lncRNA downstream 1745 45457607 ~ 45457815 (+) True G1179352
TU1344994 lncRNA downstream 5640 45461502 ~ 45461701 (+) True G1179359
TU1344995 lncRNA downstream 6191 45462053 ~ 45462305 (+) True G1179360
TU1345004 lncRNA downstream 15323 45471185 ~ 45471415 (+) True G1179369
XM_036941255.1 mRNA upstream 2217 45358739 ~ 45451742 (+) True usp43b
XM_021558229.2 mRNA upstream 185539 45223469 ~ 45268420 (+) False LOC110486541
XM_021558228.2 mRNA upstream 185539 45223471 ~ 45268420 (+) False LOC110486541
XM_021558210.2 mRNA upstream 299227 45152082 ~ 45154732 (+) True hmox1a
XR_002468078.2 mRNA upstream 313019 45135680 ~ 45140940 (+) True LOC110486534
XM_021558235.2 mRNA downstream 28936 45484798 ~ 45524322 (+) False LOC110486545
XM_021558236.2 mRNA downstream 49056 45504918 ~ 45524322 (+) True LOC110486545
trnas-aga-61 mRNA downstream 70943 45526805 ~ 45526886 (+) True trnas-aga-61
XR_005035567.1 mRNA downstream 73536 45529398 ~ 45553552 (+) False LOC110485192
XM_036941256.1 mRNA downstream 73536 45529398 ~ 45554103 (+) False LOC110485192
TU1344763 other upstream 140926 45312330 ~ 45313033 (+) True G1179156
TU1343973 other upstream 484240 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 527642 44920363 ~ 44926317 (+) True LOC110485188
TU1343925 other upstream 589776 44859869 ~ 44864183 (+) True G1178425
TU1343861 other upstream 785500 44668068 ~ 44668459 (+) True G1178363
TU1344997 other downstream 6726 45462588 ~ 45462943 (+) True G1179362
TU1345036 other downstream 73574 45529436 ~ 45530128 (+) True LOC110485192
TU1345697 other downstream 718166 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 718620 46174482 ~ 46176562 (+) True LOC118936304
TU1345745 other downstream 783282 46239144 ~ 46273601 (+) True G1180047

Expression Profile