RNA id: TU1344941


Basic Information

Item Value
RNA id TU1344941
length 1739
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G1179318
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45453959 ~ 45455854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTAAtttgcaattcaaataaattccaGTATGGTAATAAGCAGATATTAGAGGCAGGTACAATATATATGTTAAGTCCACTTGTGCTTTATCCTGACGTTGCTCTCTAATCAGAAGCATACATTATCTGATTTGATCATCTGGAGCCTTCAtttacataattacaaatcagGTATAAAATGTAGACTTTTACAAAAGTTGCATATAAAATATAGTCAACCCATGCCTTCCCAAGGAAAGCATCCTTCATTTAGGGTCATTTCCAAAACAAGTGCTCATTTTGGTAAACAAAGTTAAATAAGGTTGCAGAAACCAAATTGATGAGAACAAGCGAATAAAAAATAAAGGCAAAACATTTGAGCTAGTGTCATCAGACAATTTTGATGGTGTCGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTAGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTAGTGTCATCAGACAATGTTGATGGTGTCGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTCGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTCGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTAGTGTCATCAGACAATGTTGATGGTGTCGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTCGTGTCATCAGACAATGTTGACGGTGTAGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTAGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTCGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTCGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTAGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTCGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTCGTGTCATCAACCAATTTGTCATGATGGTTGACGGTGTAGAGTCATCAACCAATTTGTCATGATGGTTGACGGTGTAGAGTCATCAACCAATTTGTCATGATGGTTGATGGTGTAGTGTCATCAACCAATTTGTCATGATGGTTGACGGTGTAGTGTCATCAACCAATTTGTCATGATGGTTGATGGTGTAGTGTCATCATATGGGGACACCATATGGGGCATCCAGTATATTGCATAGCTACTACTGTATGTCTGCTAACACAATCATACAGTATATGTCCTACACATTAACATTATAGTTTAGGAGAATAGTAAATGATTGTATAATTTCATTGGGTTTAAATTCTAGATAATTTCAGATACATGAAGTCAACTCAGTTGATGGCCAGTTGATGGCCTATGCTTCTCATGGGGCGATGGGCCTAAGTAATTAAGTAACTCAGAAATCTAATAGATAAATACATTTACTCGAATAGTGTTTTTCCCTTTACAGAAGCACTGTATGCCATTGTGTTGGTATTATCCGTATTACTACTACATATGTTCATATACAGTTGATGTAAGCTCAAACACATGTAACATAAAACACACATCATAGGTTTCCATCCATGGTTGCTGGGAAATATGCACTGACTAGAACATACACAGAATGTGCATATATCTGAATTGGCATGTACCCTATGGCTGACAATTAAAATGCATTACAGCACTCTATAGGAAAAGTTACTCAATGATCTTCATTTAATGTAATAGATcgtcatgtacagtggggcagaaaagtatttagtcagccaccaattgtgcaagtcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344980 lncRNA downstream 8520 45444241 ~ 45445439 (-) True G1179346
TU1344978 lncRNA downstream 10383 45443237 ~ 45443576 (-) True G1179344
TU1344819 lncRNA downstream 101057 45352570 ~ 45352902 (-) True G1179209
TU1344818 lncRNA downstream 108533 45345215 ~ 45345426 (-) True G1179208
TU1344726 lncRNA downstream 183860 45269892 ~ 45270099 (-) True G1179121
TU1345288 lncRNA upstream 82414 45538268 ~ 45538793 (-) True G1179625
TU1345293 lncRNA upstream 91969 45547823 ~ 45548058 (-) True G1179630
TU1345292 lncRNA upstream 92671 45548525 ~ 45549374 (-) True G1179629
TU1345322 lncRNA upstream 151540 45607394 ~ 45627018 (-) True G1179658
TU1345353 lncRNA upstream 184036 45639890 ~ 45640411 (-) True G1179685
XM_021558231.2 mRNA downstream 120927 45307070 ~ 45333032 (-) True LOC110486542
XM_021558230.2 mRNA downstream 120928 45300733 ~ 45333031 (-) False LOC110486542
XM_021558225.2 mRNA downstream 240304 45200981 ~ 45213655 (-) False pik3r6b
XM_021558233.2 mRNA upstream 25146 45481000 ~ 45484678 (-) True mchr1b
trnas-aga-60 mRNA upstream 70735 45526589 ~ 45526670 (-) True trnas-aga-60
NM_001124180.1 mRNA upstream 196042 45651896 ~ 45653968 (-) False LOC100135782
XM_021556128.2 mRNA upstream 196051 45651905 ~ 45654777 (-) True LOC100135782
XM_021558242.2 mRNA upstream 199044 45654898 ~ 45677812 (-) False LOC110486550
TU1344653 other downstream 260654 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 366829 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 401935 45051576 ~ 45052024 (-) True G1178996
TU1344579 other downstream 425346 45026515 ~ 45028613 (-) True G1178982
TU1344529 other downstream 472759 44969210 ~ 44981200 (-) True G1178958
TU1345280 other upstream 73582 45529436 ~ 45530114 (-) True G1179619
TU1345282 other upstream 76004 45531858 ~ 45532662 (-) True G1179621
TU1346367 other upstream 1057603 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 1427574 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 1427574 46883428 ~ 46915018 (-) True LOC110486590

Expression Profile