RNA id: TU1345282


Basic Information

Item Value
RNA id TU1345282
length 805
RNA type TUCP
GC content 0.59
exon number 1
gene id G1179621
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45531858 ~ 45532662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCTTCGGTTTAGGAACCAGTATTGCCTCCGGTGGCGGTCATAGCCGATGGGCTCCTGGCGGATGTAGGGTTTGCTCTTCTGCATCTCTGTCACACAGTCTGTGACCCCGGGTACCTTGTGTGCCACGCAGATTTCACACTGCCATTCGTCCTCCGGCACCTCTACCAGAGGCGGCTTCACACACTCCAGGTGGTAGACGGCAGAGCAGGTCTCACAGCACAGCAGGTCCCCCAATCTGTGGCACACCCTGCAGTGGTCATCATACTGCACCACCCCCTCTGACATTAACTCCTCACGGGCGATGTTGGTGGTGAGGAACTGATCCACCAAGAACTGCAGCACCTTGATCTTACTGTCCAGAGGGCCGTAGGGGTAGTCCTCCACCTCCTggtagagcaggacatggtggtaCTCCTGGTCGCTCTCGCAGTAGGCACGGACCACCTCGGGCCACGTCATGCCATCAATGAAGTAGAGGGTGGAGTTGACACTGTCCTTGAGGTCAGCAGGACCAAACGTGGTGTTGGAGGTGTCCTCCTCACGCAGGATGGCCTTCAGCAGGGCTGTGTGGGTCTCTGCCATCAGCGTGCACTGCTCCTGGCCTACCAGCGCAGCACAGAAGTCCTCAAAGCGGAAGGGAGAGAGCCGCAGCACCGTGCTGAAGTTGCGCAGGACCTCATAGATGGAGGACACGTTGAGCAGTTCCTCGCTGGGCACCAGGAGGTCCTCAGAGGTTCTGGGCAGCTCCAGAGGAGGGATCTCCTTTTCCTCAAAGATGGGCGAGCGAGGGCAGTGCACCCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1344940 lncRNA downstream 76004 45453959 ~ 45455854 (-) False G1179318
TU1344941 lncRNA downstream 76004 45453959 ~ 45455854 (-) False G1179318
TU1344942 lncRNA downstream 76004 45453959 ~ 45455854 (-) True G1179318
TU1344980 lncRNA downstream 86419 45444241 ~ 45445439 (-) True G1179346
TU1344978 lncRNA downstream 88282 45443237 ~ 45443576 (-) True G1179344
TU1345288 lncRNA upstream 5606 45538268 ~ 45538793 (-) True G1179625
TU1345293 lncRNA upstream 15161 45547823 ~ 45548058 (-) True G1179630
TU1345292 lncRNA upstream 15863 45548525 ~ 45549374 (-) True G1179629
TU1345322 lncRNA upstream 74732 45607394 ~ 45627018 (-) True G1179658
TU1345353 lncRNA upstream 107228 45639890 ~ 45640411 (-) True G1179685
trnas-aga-60 mRNA downstream 5188 45526589 ~ 45526670 (-) True trnas-aga-60
XM_021558233.2 mRNA downstream 47180 45481000 ~ 45484678 (-) True mchr1b
XM_021558231.2 mRNA downstream 198826 45307070 ~ 45333032 (-) True LOC110486542
XM_021558230.2 mRNA downstream 198827 45300733 ~ 45333031 (-) False LOC110486542
XM_036941254.1 mRNA downstream 318203 45200981 ~ 45213655 (-) False pik3r6b
NM_001124180.1 mRNA upstream 119234 45651896 ~ 45653968 (-) False LOC100135782
XM_021556128.2 mRNA upstream 119243 45651905 ~ 45654777 (-) True LOC100135782
XM_021558242.2 mRNA upstream 122236 45654898 ~ 45677812 (-) False LOC110486550
XM_036941273.1 mRNA upstream 148196 45680858 ~ 45692754 (-) False LOC110486551
XM_036941274.1 mRNA upstream 148196 45680858 ~ 45692855 (-) False LOC110486551
TU1345280 other downstream 1744 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 338553 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 444728 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 479834 45051576 ~ 45052024 (-) True G1178996
TU1344579 other downstream 503245 45026515 ~ 45028613 (-) True G1178982
TU1346367 other upstream 980795 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 1350766 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 1350766 46883428 ~ 46915018 (-) True LOC110486590
TU1347403 other upstream 1900134 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 1929619 47462281 ~ 47466686 (-) False LOC110486594

Expression Profile