RNA id: TU1345292


Basic Information

Item Value
RNA id TU1345292
length 796
lncRNA type antisense_over
GC content 0.61
exon number 2
gene id G1179629
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45548525 ~ 45549374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGGTTCTCCTCCCGCTCTGCTGGAGTCATGGTCTTCCTCTGTTTCAGATTttctatcacagcattctgcttCATCACCACCTGTTTCTGGATGATGTCGCTGGAGGCCTGCAGGCTCTGCTCCCTTTTGGCCTcctgctgcttcttcttctgctgctgctctctgagCTGCTGGATCCTCTGCAGGTGGTCCTGCATGCTGGCTGTCTGGATGGTCACCACGTTCTGAATCTGGTGGGCCTGCACCTGGCCTCCTGCCTGCTGGATCTGAATAGGCAGCTGCAGCTTGATCTGCTGGGGCACCGCCCCACCCTGCTGGGCCTGGAGCTGGGCCGCCACGTGGGTCTGGATGGTGCCCAGCACCTGGACTTGCTGCTGGGGCCTGATCTGAGCCGTAACCTGGGGCTGGAGTTGAGCATGGGCCTGGATGGGCCTCACTGTGGCCTGGGTGACGGAGGGGGAGACCGAGAGAGTCTTCATATGGACCGGTTGTGGAGAGGTTGGGATCTGGGCTATCTGCTGGATGGGTAAGGCAGTGGGGGACTGGAGGGGAATGTGGACTTGAGCCTGAGGGGGTTGAGTCTGATATGTGGACACTGGAGGGGGGGCAGGAACGAGGGCAGGGGGCTGGACTGGAGTGGTAGCCTGTTGAGGAGGCTGGACTGGAGCGATAGCCTGTTGAGGGGGCTGGACTGGAGCGATAGTCTGTTGAGGGGGCTCGACACGAGCGATAGCCTGTTGAGGGGGCTCGACACGAGCGATAGCCTGTTGAGGGGGCTGGACACGAGCGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345293 lncRNA downstream 467 45547823 ~ 45548058 (-) True G1179630
TU1345288 lncRNA downstream 9732 45538268 ~ 45538793 (-) True G1179625
TU1344940 lncRNA downstream 92671 45453959 ~ 45455854 (-) False G1179318
TU1344941 lncRNA downstream 92671 45453959 ~ 45455854 (-) False G1179318
TU1344942 lncRNA downstream 92671 45453959 ~ 45455854 (-) True G1179318
TU1345322 lncRNA upstream 58020 45607394 ~ 45627018 (-) True G1179658
TU1345353 lncRNA upstream 90516 45639890 ~ 45640411 (-) True G1179685
TU1345360 lncRNA upstream 107003 45656377 ~ 45656545 (-) True LOC110486550
TU1345362 lncRNA upstream 109658 45659032 ~ 45659235 (-) True G1179692
TU1345363 lncRNA upstream 109976 45659350 ~ 45661258 (-) True G1179693
trnas-aga-60 mRNA downstream 21855 45526589 ~ 45526670 (-) True trnas-aga-60
XM_021558233.2 mRNA downstream 63847 45481000 ~ 45484678 (-) True mchr1b
XM_021558231.2 mRNA downstream 215493 45307070 ~ 45333032 (-) True LOC110486542
XM_021558230.2 mRNA downstream 215494 45300733 ~ 45333031 (-) False LOC110486542
XM_036941254.1 mRNA downstream 334870 45200981 ~ 45213655 (-) False pik3r6b
NM_001124180.1 mRNA upstream 102522 45651896 ~ 45653968 (-) False LOC100135782
XM_021556128.2 mRNA upstream 102531 45651905 ~ 45654777 (-) True LOC100135782
XM_021558242.2 mRNA upstream 105524 45654898 ~ 45677812 (-) False LOC110486550
XM_036941273.1 mRNA upstream 131484 45680858 ~ 45692754 (-) False LOC110486551
XM_036941274.1 mRNA upstream 131484 45680858 ~ 45692855 (-) False LOC110486551
TU1345282 other downstream 15863 45531858 ~ 45532662 (-) True G1179621
TU1345280 other downstream 18411 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 355220 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 461395 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 496501 45051576 ~ 45052024 (-) True G1178996
TU1346367 other upstream 964083 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 1334054 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 1334054 46883428 ~ 46915018 (-) True LOC110486590
TU1347403 other upstream 1883422 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 1912907 47462281 ~ 47466686 (-) False LOC110486594

Expression Profile