RNA id: TU1345095


Basic Information

Item Value
RNA id TU1345095
length 428
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1179452
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45669560 ~ 45669987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACAACTGGATCAGAGCCTGAGATTTTTTCACCCTTTCATGCTGAGTGGTTATCAAAAGGGAGTGAATTTTTCAATTAGGATACGTtaaggaactattgtcattctcaatggatgtaaaaacagactttgtttatttgctgtttgaggtgaaggaAAAATGActtttgagaagctccacagtgatggtgagttaagacaatcagaaatagtatcagatccccaaatgggcacatttataggtCTACATTTGtgcgcaggccaggtagcctaggcctacttctatgtgtaatcaggtatTTACTCAAGATTGACAGGAGCGCTTCAAATAAAAGACAGTGAATAAATTGACAGCTCGGAAAttgaatgaaataaaccaaaacttagGTTGTGCACTCTGCCAACAATGTTTGGTAagactgtaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345091 lncRNA upstream 6438 45662862 ~ 45663122 (+) True G1179448
TU1345088 lncRNA upstream 13521 45655027 ~ 45656039 (+) True G1179445
TU1345089 lncRNA upstream 15064 45653767 ~ 45654496 (+) True G1179446
TU1345041 lncRNA upstream 136610 45532718 ~ 45532950 (+) True G1179402
TU1345004 lncRNA upstream 198145 45471185 ~ 45471415 (+) True G1179369
TU1345096 lncRNA downstream 676 45670663 ~ 45670951 (+) True G1179453
TU1345101 lncRNA downstream 8886 45678873 ~ 45681064 (+) False LOC110486552
TU1345102 lncRNA downstream 8886 45678873 ~ 45681064 (+) True LOC110486552
TU1345112 lncRNA downstream 20509 45690496 ~ 45690869 (+) True G1179465
TU1345558 lncRNA downstream 298083 45968070 ~ 45970177 (+) True G1179879
XM_021558241.2 mRNA upstream 22711 45632656 ~ 45646849 (+) True LOC110486549
XM_021558239.2 mRNA upstream 42540 45621533 ~ 45627020 (+) False LOC110486548
XM_021558240.2 mRNA upstream 42540 45621533 ~ 45627020 (+) True LOC110486548
XM_021558237.2 mRNA upstream 54941 45559934 ~ 45614619 (+) True LOC110486546
XM_021558238.2 mRNA upstream 109959 45555818 ~ 45559601 (+) True LOC110486547
XR_002468081.2 mRNA downstream 8851 45678838 ~ 45681070 (+) False LOC110486552
XR_005035810.1 mRNA downstream 9543 45679530 ~ 45679601 (+) True LOC118938602
XR_005035809.1 mRNA downstream 10105 45680092 ~ 45680163 (+) True LOC118938601
XR_005035811.1 mRNA downstream 10337 45680324 ~ 45680396 (+) True LOC118938603
XM_036941275.1 mRNA downstream 60480 45730467 ~ 45739708 (+) False LOC110486555
TU1345036 other upstream 139432 45529436 ~ 45530128 (+) True LOC110485192
TU1344997 other upstream 206617 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 356527 45312330 ~ 45313033 (+) True G1179156
TU1343973 other upstream 699841 44967368 ~ 44969719 (+) True LOC110486526
TU1343969 other upstream 743243 44920363 ~ 44926317 (+) True LOC110485188
TU1345697 other downstream 504041 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other downstream 504495 46174482 ~ 46176562 (+) True LOC118936304
TU1345745 other downstream 569157 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 661731 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1704176 47374163 ~ 47374477 (+) True G1181472

Expression Profile