RNA id: TU1345701


Basic Information

Item Value
RNA id TU1345701
length 2038
lncRNA type antisense_over
GC content 0.50
exon number 6
gene id G1180008
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46230385 ~ 46235061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCTTTGAGTTTCGTATATTTATTCATCACGGAAAGTGCATTGTTATTGCAGGATTAATATTTCACAATAGATTAAGATAATACTATGGTATTCTTTCAAATGTATGAAAATACAGAGCATGTGAGTGCATAGCATAACTGGAGTAAGGAAGAGGCAGAAAGAATCACATAGAAGCAGCAGCATCAGTGGTCACATAGCTATCCAATATCATGATGGTCTAGTTCTTTACAGTAACGAAGGTTCTGATTACTCTATAGGAGTGGTGAGAGGGTAACCATAGGGTAGAGGGATGGTGTTAAGAGGGAAAGTTCAGCCCCACAGgcacagggagggacagaggcaATAGGCCTTGCTCCCAGGGGACTTGATCACCAGGTCCTTAATGATCTCTGTCGTGCCGAACAGAGGGAACAGCTTCTCGTTGAAGCTCTCATTGTAGGTGTAGATGTGGGAGCGGCTGTCTACGTCGTAGAAGGACAGCTGGCCCTGGTCGTAGTCCAGGTAGACGGCCACCTTGCGGGGGATAAGACCAGGCGGCAGGGCAGTGAAGGGCACAGTCAGGGCCTTGAGCTCCGTGCCCCTCTCCAGGCGCAGGGTCAGGTAGCCCGTGTCTGTGTTCAGGGACTTGAAGCCCTTCCTCAGGGCTGACTCCTTGGCCACACCCAGCCGAAAGTCCCGCTCCCCAACCTCCACCTCCCAGTAGTGGCGGCCAGAGTTGAAACCCTCCACCCCTGTGGCGCACCACCAGCCATCGAAGCGCTGGTGGTAGTTTGGCACATCCTTTCTCTCGAAGCCGCAGCGCATCTTCTTCTCGTCATTGGAGATCAGCAGGTCAGGGTTGGCCGTGTCCAGGTCAAGGGAAATCTCCACTGCTGCATTAGAGATCCAGTCCCATACTGAGTGAGGAATGTAGCGGGCAGCACCTATCTTCTGAGTCCTCTGCTTCCATATGAGCCACTGTTGAGGGATGGCTTCCTTGTCCAGGCCCTGTGTCAGTAAGACCCACATGAGCAGTTCCATGGCTGTCAAGAGGTTGGGCATGTGGCGACTCCTCCATGCAGCCTGGAGGTCCTCCAGAACTTGAGCCACAGCCTCCCCAGGCCACACACTTTGCTCAGGTTGGGCTCTCAGGTCCTTGGTCCAGTTGATGATTGTCCTCTTAGCGTTCTCCATTTCATTCTCACTGAACAGGTCTTGCTTCCTCCACTCGCTCTCCTCTGGCCAACCATCCGACTGCATGGGCCTCTTCTTGCTCTCCAGCAGAGACGCCCACTCCAGGATGAAGGccctgcaaagaggagtgggccAGATGTCCTCTAGTTTCCAGATGTTCTCCAGCACCTCAGACCTCTGGCACACTCGATTGAGATCTCTAGCCAGCTCCACTATAAACAGCTGATTCTCTTCCAGTGGCTCTCTCTTATCATTCTTCGCCCTCGTGCGAGTTTCCTTAAGCTTGGCTGTGATGTTCTTGACCGGCTCGACTATAAAGTGGAAACACTGCATCATCTTGGAAACTGTGCTGAGACTCTACAAAGAAAAAGACAGataaaatagcattttaaatgtACCTTGACAGACAGGGAACCTCTACTTGACAGAATATACACTACCCGTGTAAGGATTTCAGATTAACAGGTGCTACTGCTGAACTAAAACCACACCACTGATCTGATTCAGTGGTAGCAGGACCACCTAAATTCTCTAAGGGGACTCAAATGGTTTGAAATCTAAAACTACCCCTGCCCTACTTTCATTAGAAATGTGTCAGCTGTTCCATCCTACTGCCCTATATTCTGTCCCGAGTCAAGATAAAAGACATTGGCATCATGGCCAAAGGAGTAACGCAGCTCCACTGTTAAGAAGATTGCTTTAAATCGTTAATCATAGTGCGGAGGGACAGGCAACACATGGCTAATCGTACTGGACCAAATCCTAACAGCAACACCTCTGTGGTCATCATAACATGAAGAATACCTCCCCTTTGGTATCTTTAATGATACTCTGACCTAGTTATTGTGTGGATGTTATTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345703 lncRNA upstream 3697 46220603 ~ 46226688 (+) True LOC110486572
TU1345704 lncRNA upstream 28081 46200500 ~ 46202304 (+) True G1180010
TU1345668 lncRNA upstream 94861 46135107 ~ 46135524 (+) True LOC110486562
TU1345656 lncRNA upstream 112788 46117131 ~ 46117597 (+) True G1179970
TU1345639 lncRNA upstream 144627 46081320 ~ 46085758 (+) True G1179953
TU1345756 lncRNA downstream 32469 46267530 ~ 46267925 (+) True G1180058
TU1345768 lncRNA downstream 61719 46296780 ~ 46297068 (+) True G1180070
TU1345769 lncRNA downstream 63150 46298211 ~ 46298451 (+) True G1180071
TU1345794 lncRNA downstream 112499 46347560 ~ 46348851 (+) True G1180093
TU1345837 lncRNA downstream 155418 46390479 ~ 46442094 (+) True G1180133
XM_021558280.2 mRNA upstream 2 46228993 ~ 46230383 (+) False LOC110486571
XM_021558281.2 mRNA upstream 2 46228993 ~ 46230383 (+) False LOC110486571
XM_021558283.2 mRNA upstream 2 46228993 ~ 46230383 (+) True LOC110486571
XR_002468089.2 mRNA upstream 4628 46219879 ~ 46225757 (+) False LOC110486572
XR_002468088.2 mRNA upstream 4628 46219883 ~ 46225757 (+) False LOC110486572
XM_036941287.1 mRNA downstream 22302 46257363 ~ 46272370 (+) False LOC110486573
XM_036941285.1 mRNA downstream 22303 46257364 ~ 46272370 (+) True LOC110486573
XM_021558285.2 mRNA downstream 39263 46274324 ~ 46294468 (+) False LOC110486574
XM_021558286.2 mRNA downstream 47591 46282652 ~ 46294468 (+) True LOC110486574
XM_036941296.1 mRNA downstream 67690 46302751 ~ 46336386 (+) False LOC110485193
TU1345697 other upstream 53823 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other upstream 53823 46174482 ~ 46176562 (+) True LOC118936304
TU1345036 other upstream 700257 45529436 ~ 45530128 (+) True LOC110485192
TU1344997 other upstream 767442 45462588 ~ 45462943 (+) True G1179362
TU1344763 other upstream 917352 45312330 ~ 45313033 (+) True G1179156
TU1345745 other downstream 4083 46239144 ~ 46273601 (+) True G1180047
TU1345717 other downstream 96657 46331718 ~ 46336278 (+) True LOC110485193
TU1347316 other downstream 1139102 47374163 ~ 47374477 (+) True G1181472
TU1347462 other downstream 1233055 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other downstream 1233140 47468201 ~ 47470012 (+) True tmem100a

Expression Profile