RNA id: TU1346261


Basic Information

Item Value
RNA id TU1346261
length 2267
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1180488
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46269902 ~ 46272249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGTTTTTATTCGTTTGTTTTTTGTTATTGTGCCACCAGTCAACCGGTTGCCATGTTTTACCAGAGGCGTTCTGTGATTGGCCAGCAGTCCCCTCTTCAGTCCAGCACTGTCATGCCTGAGTCAGGGAGCCAGTGCCACTATGTCATCATCAGAGTGAGTCATGAGTGGGCTGTGGACGGAAGCGTGGACAGAAGTGACATTGAACGAAGTGTGATGTGtccaaaaaaaataatacaagaaGTGGTTCTCAATAGTTTGAAAAAGGAGTTGATATTGAATGGATGGACAAATATATATTTCTCAAAGACTAAAATATGAATAATCTATTCCATTTACACTAAACGGTGCTCTTCTATTCTTTCTGTTAAATGGAAGCATCACTGAAGCAAGTGTGCAAGGGAAACAAGGTCACTTGTAAACTCAGAGactgaaaaaaaaacaagaaaagtaGGAGTTTCAGCCAGTCtagttttaaaacattacaattaaAAACAAAGGTATAGGGTAGGGTTTCAGAATTGTCTAAAAGGGAAATAAGTGCACGTCTTGAAGCTATTCTCCCATTATAAACAGTTCATATTAACAAAGTAAAGGCAGCTTCGATTTCTTAACCAGACCATGAAATAGTCATGTTGACCCCTCCTGGATGGGAGTTTCATTGTTGTAGAAATGCTTATGGACAACCAGTAACATTAAAGTGGTAGGTAGATGACAGAAGAGTCTTCACTTTGTTGGCATACAGAGCATAGACCACATGGACAGTACTGCACTGCATATACACTGATACAGAAGAGGCAGCTAGCCCAGAGCCATGTacttagagagttgggccaacaAGGTTTCTGCATTATAATGTATTTGCATGACTGTCTAGTATTAGAACAATATTCTAAAAGTTTGCCTAACTCTAAATATATGGCTCTAGCTAGGCCTATATACCATAACTATGACTAGACCCATTGAGAAGCGATGTAGTCCACTGTGAAAATGATGATGCCACACTGGAGAGCCAGGCCACTGTAGCCTAGAATATTACCTACATCAGTTAGGCACTTCCTCTGACACACAAAACCCCCGGTGGCTTTGCTTTGCAGTGATCATGGACAACAAAGACACATCTCAATGTTcaagaaacaaacaaaacaaacatttaaaaacatgtcACAGTAAACAGAACTCATGGGGGAAAGAGGACTCTCCCAACTTTAACTTGTCTCCCAGCTGGTAACTCAGAACATTATTATTCTTCCTCCTCCAGGTGAGCTAGCTGGGTCAGATATGTGATAGTGACGCCGCAACGTTCTAGCAGCACTTTTATACAAAAGACATGTAAGTAAGTGAAGAGGATGCCACGTCACCATTGTGACGACCTCCACCTTGACCTTTTAAGCTCCTAATCCTCCTCGTTGTCATTCTCCAACTACTGATCGACCCGGTCCTGTGTAACCTTAGTCTTACAGTAAAGTGCACTTCCCCAATCTGCTGCTGCTGTTCTGATAATGCTTGAAAATAAGCACAAAGGTACTAGTCCAGAGGACCCACTGCCCTCTGACAACAATACAACACAGCATTTAGCCACTGTCAAAATGTTGGCCTGTGCATTGAACAGAGTTCAAACATGTGCGGGTGGGGTTCTCCTCTTTCCAAAGTTCTACCCAGACAGACCCTGAATGAAGACATATGCAGACAGATAACATAACACAAATTGTCCATGTAACGAACAATGAAGTTCgaacacaaaaaaaaactttGTCTTGCAGTCTTCGTGTGCAAATTTCCACCACGCATCTCCTCTGAAAAGGGCATGTAGCCTCTAAACTGAGAGCATAGCCACTCCTCAGCGTATGTAGGGAGAAGCCGTGTCTATTTATGTGCCTTATGAGTTAGCCTTAGAGACCAGACCCCACTCtccctctactatAGTCCAGCATGCCTCCTGTCCGGGGGGCTACCTGATCCGGCCGTCACTTTTGACAGGGCCAAGTTCTGACTTAGGGTCTGGGGCGAGGGAGCTCCAGGTGGACTTGGTACAGGGGCCAAGGGAAGGGCAGGGGCCCGGGGAGGGCAGGGTGGAGCACAGGTCCCCGGTCACCCAGAAGGCCCCCACGGTGCGGTCCACCCAAGCTTCCAGGGGCTTGCCCACCAGCTGGGCCCTCTGCTGGGCCTCCTGCAGGGCAGGCTCCTGTGGGGGCAGCTTCAGAACAGATCTCAGCTGCTGGAAGCCCTGCTCCAGGTACATGTTGCCTGGTGGCCCCGCGTGCAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1346069 lncRNA downstream 86534 46179960 ~ 46183368 (-) True G1180309
TU1346166 lncRNA downstream 93339 46174701 ~ 46176563 (-) True G1180396
TU1346033 lncRNA downstream 347736 45912130 ~ 45922166 (-) True G1180280
TU1345521 lncRNA downstream 363000 45906679 ~ 45906902 (-) True G1179843
TU1345520 lncRNA downstream 363246 45906373 ~ 45906656 (-) True G1179842
TU1346266 lncRNA upstream 9329 46281578 ~ 46281802 (-) True G1180493
TU1346282 lncRNA upstream 25779 46298028 ~ 46298267 (-) True G1180504
TU1346284 lncRNA upstream 30232 46302481 ~ 46302702 (-) True G1180506
TU1346277 lncRNA upstream 59477 46331726 ~ 46334543 (-) True G1180499
TU1346371 lncRNA upstream 165673 46437922 ~ 46443184 (-) True G1180578
XM_036941284.1 mRNA downstream 15710 46245465 ~ 46254192 (-) True LOC118938311
XM_021558278.2 mRNA downstream 33975 46230384 ~ 46235927 (-) False LOC110486569
XM_021558277.2 mRNA downstream 34036 46230384 ~ 46235866 (-) False LOC110486569
XM_021558279.2 mRNA downstream 34039 46230385 ~ 46235863 (-) True LOC110486569
XR_002468087.2 mRNA downstream 40947 46214869 ~ 46228955 (-) True recql5
XM_036941295.1 mRNA upstream 64295 46336544 ~ 46392945 (-) False LOC110486575
XM_036941293.1 mRNA upstream 64295 46336544 ~ 46422380 (-) False LOC110486575
XM_036941294.1 mRNA upstream 64295 46336544 ~ 46422380 (-) False LOC110486575
XM_036941288.1 mRNA upstream 64295 46336544 ~ 46422381 (-) False LOC110486575
XM_036941289.1 mRNA upstream 64295 46336544 ~ 46422381 (-) False LOC110486575
TU1345282 other downstream 737240 45531858 ~ 45532662 (-) True G1179621
TU1345280 other downstream 739788 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 1076597 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 1182772 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 1217878 45051576 ~ 45052024 (-) True G1178996
TU1346367 other upstream 241208 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 611179 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 611179 46883428 ~ 46915018 (-) True LOC110486590
TU1347403 other upstream 1160547 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 1190032 47462281 ~ 47466686 (-) False LOC110486594

Expression Profile