RNA id: TU1346282


Basic Information

Item Value
RNA id TU1346282
length 240
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1180504
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46298028 ~ 46298267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGtaatgaaggttgggttttgatttgacgAGTTTCATTTGCCTACTAACATGGGGTGAACAGCTGCAGTGATTGCTCTCTATTCAATAgcatagacagtgagacagacctgcccagcagctCCGACTTTGTTTACATACGACAACGTGTGTTGCATTTctttacttgagaaatactgtaccACACACTTCAGTTAGATGTAAAATCACGCAACTAAAACATCCTAGGTAAAAACGTCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1346266 lncRNA downstream 16226 46281578 ~ 46281802 (-) True G1180493
TU1346261 lncRNA downstream 25779 46269902 ~ 46272249 (-) True G1180488
TU1346069 lncRNA downstream 114660 46179960 ~ 46183368 (-) True G1180309
TU1346166 lncRNA downstream 121465 46174701 ~ 46176563 (-) True G1180396
TU1346033 lncRNA downstream 375862 45912130 ~ 45922166 (-) True G1180280
TU1346284 lncRNA upstream 4214 46302481 ~ 46302702 (-) True G1180506
TU1346277 lncRNA upstream 33459 46331726 ~ 46334543 (-) True G1180499
TU1346371 lncRNA upstream 139655 46437922 ~ 46443184 (-) True G1180578
TU1346375 lncRNA upstream 144988 46443255 ~ 46446313 (-) True G1180582
TU1346393 lncRNA upstream 195913 46494180 ~ 46494722 (-) True G1180598
XM_036941284.1 mRNA downstream 43836 46245465 ~ 46254192 (-) True LOC118938311
XM_021558278.2 mRNA downstream 62101 46230384 ~ 46235927 (-) False LOC110486569
XM_021558277.2 mRNA downstream 62162 46230384 ~ 46235866 (-) False LOC110486569
XM_021558279.2 mRNA downstream 62165 46230385 ~ 46235863 (-) True LOC110486569
XR_002468087.2 mRNA downstream 69073 46214869 ~ 46228955 (-) True recql5
XM_036941295.1 mRNA upstream 38277 46336544 ~ 46392945 (-) False LOC110486575
XM_036941293.1 mRNA upstream 38277 46336544 ~ 46422380 (-) False LOC110486575
XM_036941294.1 mRNA upstream 38277 46336544 ~ 46422380 (-) False LOC110486575
XM_036941288.1 mRNA upstream 38277 46336544 ~ 46422381 (-) False LOC110486575
XM_036941289.1 mRNA upstream 38277 46336544 ~ 46422381 (-) False LOC110486575
TU1345282 other downstream 765366 45531858 ~ 45532662 (-) True G1179621
TU1345280 other downstream 767914 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 1104723 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 1210898 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 1246004 45051576 ~ 45052024 (-) True G1178996
TU1346367 other upstream 215190 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 585161 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 585161 46883428 ~ 46915018 (-) True LOC110486590
TU1347403 other upstream 1134529 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 1164014 47462281 ~ 47466686 (-) False LOC110486594

Expression Profile