RNA id: TU1346375


Basic Information

Item Value
RNA id TU1346375
length 2603
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1180582
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46443255 ~ 46446313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTATAATTGCATTTTTATTCCACGCTGTTGAGAAAAGGTTTGAGGAACAGGGCTGAGACTTATTTTACCATGATATGTTCTACCATGATATGTTGCCAAGTCAGAGTGTCAGACAGTTATTCAAGATTGTATAGTGTATACCTGATGCACTGCCAGCTAGCTAATAGCCAGATGGTGACAGCATTTGATCAGTGTAGCCTGAAAAGGCAAATCAGGCCACTATTTGCAAGCCATGTTTATTGTCTCTACTTGACAAATAAAGATCAACATTATTATTGCAAAAAGGCTGACTCACTGGAATATAGGTATCTTCCCAACAAACGTTTTGCTCATAAACTGTTCAGCCTATCAGTGTCCGTAGGTCTATCTAGAATGTGTATTACCGTATGCCTGTCCTATCTCCAATTACAACATTGTTACATCTAGAGAGAACATAGACTCAGGGATtgtagtggaaatttcctgtatttaccaaatcatgagagcaaaccacacacaagtcagagttatcataaagtccatctttaattatatgagctccatcacaacactgtgactctcagattaattcagtgtctataaatgaattctctgagagtccttacacattgcaactgagatcctttatatcaaatcaaatcaaatgtatttatatagcccttcatacatcagctgatatctcaaagtgctggacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggaggttataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtccaataataataaggcagaacagttgaaactggagcagcagcacggccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctgaggcatggtcctaaggctcaggtcctccgagagagagaaagaaagagagaattagagagagcacacttaaattcacacatgaagacaagcttgacctctcccctctctgcggcccaagtaactgaaCCCAGGACAGATAAAGGATAACTGcaaatggccaccactatagtacaacaagatacattctaaatgagaagtaactcacaagcatataatgaaaataaaacatcttatctatgttacccaactattcTGATGCATCCCCAAcagggtagacgtaacatagtaaatggaGATCCGGGACACTCTAATTAGTATGATAGAGTGTCCCGTATTTAATTTGTAAATGTGCAcaatccattttgtatgatatgttacgaattttaaTTCATATGTTATGTTACGACATTGCTAAGCTTATGgtatgttacaaattgcaatttgttgtggctaacgttagctagcctaaaggttagggttaaggttaggtttaggaattaggttaaagggttaaggttagggttaggagaagggttagctaacatgctaagtagtaaatagttgctaattagctaaaatgcaagAGTTGTTGCTGAGATTTGAAAACGCAACCTTTGGGTGGCTAGACATTCGCGTTATACTCCCACTCATCCACCCCGGCGAACAACcctactttagtttttgccttaactaaccttttactgcagtgggctaaatcagggtcacacagattgtttattggtagtcttaaacaaaacTTCTTTGACACCAAcgtttaaattattttatttttttaacctttatttaacaaggcaagtcagtttaagaacaaattcttctttacaatgatggcctactggggaacagtgggttaacggccttgttcaggggcataacaacacatttttaacttgtcagctctgggatttggtcagttactggcacaacactctaaccactaggctacctgccgccccaaaatatacacctcacacacattgttatgggctttaaaaagaagacacctgttccatgtcagatatagagttgaaatgtataaagttttgagtttgcatcccaatattgcactttaaatacatcacagaagactgaaatatatcaaAACCATTTGACAAAGAAAGACCAGATTTTCAGGTTAttcattatgaaattatgaaaaatattaataacattccacccatgaggccactttTCATTTGTCTGCAGGAAATGGCTACAGCATTTCCAGACTGTCTGTCAGATTCAGTCTTTAACGATTATCACGTTACACTGTGCGACGTTACCAAATTAAAATCTTgatatcaacctggccagatTGTATGATTTGCTTCAGTTCTGTCGTCACATTCTGCAATTTGCCTGCAGCGGTGTATTTTATCTGAGCATGTGCCAGCACCAGCAGCGCAAGCCTCACTCAATGCTTATGCGTGAGTGAAGTGAGTTCTGAATAAATTCAAGTAGGCATCTtataaagtttgtatgtgaaaactatttctaTGTCCTAACGTTTAATTTGATTGCCGATTTTGTGCATTTATTGAAATCTCACCAGGTAGCCTAATTTCAGATGTGTCATATAAAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1346371 lncRNA downstream 71 46437922 ~ 46443184 (-) True G1180578
TU1346277 lncRNA downstream 108712 46331726 ~ 46334543 (-) True G1180499
TU1346284 lncRNA downstream 140553 46302481 ~ 46302702 (-) True G1180506
TU1346282 lncRNA downstream 144988 46298028 ~ 46298267 (-) True G1180504
TU1346266 lncRNA downstream 161453 46281578 ~ 46281802 (-) True G1180493
TU1346393 lncRNA upstream 47867 46494180 ~ 46494722 (-) True G1180598
TU1346394 lncRNA upstream 51432 46497745 ~ 46497976 (-) True G1180599
TU1346396 lncRNA upstream 54248 46500561 ~ 46500790 (-) True G1180601
TU1346398 lncRNA upstream 57251 46503564 ~ 46504071 (-) False G1180602
TU1346403 lncRNA upstream 57251 46503564 ~ 46504071 (-) False G1180602
XM_021558288.2 mRNA downstream 14989 46422708 ~ 46428266 (-) True LOC110486578
XM_036941289.1 mRNA downstream 20874 46336544 ~ 46422381 (-) False LOC110486575
XM_021558295.2 mRNA upstream 26181 46472494 ~ 46482863 (-) True LOC110486581
XM_036941301.1 mRNA upstream 38458 46484771 ~ 46487881 (-) False LOC110486583
XR_005035574.1 mRNA upstream 38458 46484771 ~ 46487881 (-) False LOC110486583
XM_021558297.2 mRNA upstream 38458 46484771 ~ 46487882 (-) False LOC110486583
XR_005035570.1 mRNA upstream 38458 46484771 ~ 46487882 (-) False LOC110486583
TU1345282 other downstream 910593 45531858 ~ 45532662 (-) True G1179621
TU1345280 other downstream 913141 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 1249950 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 1356125 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 1391231 45051576 ~ 45052024 (-) True G1178996
TU1346367 other upstream 67144 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 437115 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 437115 46883428 ~ 46915018 (-) True LOC110486590
TU1347403 other upstream 986483 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 1015968 47462281 ~ 47466686 (-) False LOC110486594

Expression Profile