Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00042821 |
| length | 1058 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 8 |
| gene id | XLOC_021568 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 16928506 ~ 16945441 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030433 | ubiquitin-dependent ERAD pathway | biological_process |
| GO:0006516 | glycoprotein catabolic process | biological_process |
| GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | biological_process |
| GO:0019005 | SCF ubiquitin ligase complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-061009-32 | Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; glycoprotein catabolic process; and ubiquitin-dependent ERAD pathway. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm. |
| ensembl_id | ENSDART00000162292 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044802 | lncRNA | upstream | 27270 | 16889152 ~ 16901236 (+) | False | XLOC_021567 |
| TCONS_00044803 | lncRNA | upstream | 27270 | 16889209 ~ 16901236 (+) | False | XLOC_021567 |
| TCONS_00042815 | lncRNA | upstream | 29716 | 16889209 ~ 16898790 (+) | False | XLOC_021567 |
| TCONS_00042814 | lncRNA | upstream | 29735 | 16889152 ~ 16898771 (+) | False | XLOC_021567 |
| TCONS_00042817 | lncRNA | upstream | 29922 | 16889403 ~ 16898584 (+) | False | XLOC_021567 |
| TCONS_00044804 | lncRNA | downstream | 208785 | 17146315 ~ 17211274 (+) | False | XLOC_021571 |
| TCONS_00044668 | lncRNA | downstream | 316968 | 17254498 ~ 17254757 (+) | True | XLOC_021573 |
| TCONS_00044805 | lncRNA | downstream | 474995 | 17412525 ~ 17421436 (+) | False | XLOC_021576 |
| TCONS_00044806 | lncRNA | downstream | 535589 | 17473119 ~ 17477448 (+) | True | XLOC_021578 |
| TCONS_00042840 | lncRNA | downstream | 605189 | 17542719 ~ 17546078 (+) | False | XLOC_021580 |
| TCONS_00042819 | mRNA | upstream | 10315 | 16908012 ~ 16918191 (+) | False | XLOC_021567 |
| TCONS_00042820 | mRNA | upstream | 10558 | 16910071 ~ 16917948 (+) | True | XLOC_021567 |
| TCONS_00042816 | mRNA | upstream | 18048 | 16889352 ~ 16910458 (+) | False | XLOC_021567 |
| TCONS_00042813 | mRNA | upstream | 44408 | 16864130 ~ 16884098 (+) | True | XLOC_021566 |
| TCONS_00042810 | mRNA | upstream | 74017 | 16823385 ~ 16854489 (+) | False | XLOC_021564 |
| TCONS_00042825 | mRNA | downstream | 10519 | 16948049 ~ 16953236 (+) | True | XLOC_021569 |
| TCONS_00042826 | mRNA | downstream | 165430 | 17102960 ~ 17114092 (+) | True | XLOC_021570 |
| TCONS_00042830 | mRNA | downstream | 283456 | 17220986 ~ 17346255 (+) | True | XLOC_021572 |
| TCONS_00042831 | mRNA | downstream | 416624 | 17354154 ~ 17385249 (+) | False | XLOC_021574 |
| TCONS_00042832 | mRNA | downstream | 417421 | 17354951 ~ 17355613 (+) | True | XLOC_021574 |
| TCONS_00042818 | other | upstream | 27500 | 16898325 ~ 16901006 (+) | False | XLOC_021567 |
| TCONS_00042812 | other | upstream | 69473 | 16858917 ~ 16859033 (+) | True | XLOC_021565 |
| TCONS_00042792 | other | upstream | 482466 | 16444961 ~ 16446040 (+) | True | XLOC_021556 |
| TCONS_00042790 | other | upstream | 571277 | 16356708 ~ 16357229 (+) | True | XLOC_021553 |
| TCONS_00042789 | other | upstream | 1176960 | 15750018 ~ 15751546 (+) | True | XLOC_021546 |
| TCONS_00042824 | other | downstream | 99 | 16937629 ~ 16945441 (+) | True | XLOC_021568 |
| TCONS_00042827 | other | downstream | 208785 | 17146315 ~ 17146991 (+) | False | XLOC_021571 |
| TCONS_00042828 | other | downstream | 209031 | 17146561 ~ 17211274 (+) | False | XLOC_021571 |
| TCONS_00042829 | other | downstream | 250354 | 17187884 ~ 17211806 (+) | True | XLOC_021571 |
| TCONS_00042836 | other | downstream | 563784 | 17501314 ~ 17501428 (+) | True | XLOC_021579 |
