RNA id: TU1345914


Basic Information

Item Value
RNA id TU1345914
length 3893
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1180193
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46471918 ~ 46476079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtaggccagtcacaAACACatgtaaatgtaatccattttaaattcaggctttaacaacaaaatgtggaaaaagtcaaggggtgtgaatactttctgaaggcactgtattacccTTATGATGTTCGCAATGTCCATGAAAACAAACTGTGTGTACTCAGATCACTGAATATCCCATTGCCAAATGCCCTGCCCAATTTGACACTATCACAGGCAAATTCCAGCCAGCCATACTAGTGACGTACTGCTTCCTCAGTATTTATGATTCACTAGGGTTTGCTTTGGCAACTACCATCACAGGTACCAGTTTAGTAATCTTACAGATACTAAAACTAACAAATGCAACACTACTGATATGGGGTTAAGGTAAGGGCTAAGGGTAGGCCAATGTTTTTGGATAGTTAGTTGAACAATTTATTGATTTAGTTGAGAATCTATAAACAATCTGTAAAGGGATTCTGATAAATTGGGATGAAACTATGGATGAAACTATGGATAAGTAGAATGAAACATTAACACGTTGCTGCATGAAAAAATTACTTATTAACTCATCAATCATTTATTAACTTTGATCTGGTTAGCGTCAAGGTATGTCTGGGTGTACATCTAAATATCTTAAAATGGCTTCCTCTCACCATTCTCCTTTATCTGCCCTGATCTGGCCAGACAGGACAGGTGAAAGCCCTGATCTGGCCCGACAGGACAGGTAAAAGCCCTGATCTGGCCAGACAGGACAGGTGAAAGCCCTGATCTGGCCAGACAGGACAGGTGAAAGCCCTGATCTGGCCAGACAGGACAGGTGAAAGCAATTTGACGGAACCCTAATAGAGGGCTTCCTTTTTCCAGTCCTGGAGATTTGGATCAGTGCGGCTGAAGAGGTTGACCAAAGGAAGCCACATTAGACCACTGAGTTGTACCCACATAGGCTCCTGGTTCTCACCATTCCCTCATCGGATCCAAGGCACTATGTGACCGACCCCAGGGACCGTAATAGTGCTAAATGCTTGACATGAGCACCTAATGGGTTAAAAACAGCGCAAACACCAGACGCATTGACCACAAGTAGCAACACAACCTCTCATCTGCAGGCCAATGACAGTATCAATTGGTGCTTATAGGCACTTTTGTCTAAAGACAGTGGAAAACACCTACTGCACAGACATACAGCAATTCACATATTTCAAAGTACTTTCAATCATTTTAGATGACAAAGCCACATTTTTAAAGCACAAAAAAACAGTATTCACTTGACTCCATGTTAACCCCACAGAACAAAGTTATACACGCAGAATCTGCATTCAAACCATTAACTTGTATTTGCTGAATAACAGTAATGTATTAGCTAGTTGCTTTTGTTTGAATTTACACTAACGAAATACAAAGCAGTTGAATCATTGTAGAGCAGCATATGCCACATAACCTAGAAGCCACATGGAAAGAACCATGAATTTAGACTGTCCAAAATATCTACCTATCCCCTCACATAAAATGTATTTGCAACATTTCACAAACCCCCTTAGCTGTACTACACAGAGAAATAAGATCAAGATGTGGAACTACAAGGCCTACAATATGTTTAAACTTTTCCCTGTGCCAGCCCTCATTTCTACTTTTAACACAACTGTTGTATCTTCTGGACTGTAACCCCCACACACTAGTGCCAAGCTAGTGTGAGAACTCTGGCATTGGTGCCCCCTTCTGTATGTGATGGAGAATATAAAATGGGGTCTCGGAATGAGAACACAAGATCAAACACCTAGGGCTCCTTTCCTGGAAAGAGGTTAATTCTAATCTTGGACTAAAACGCATCCATGATTGACTTCTCTGAAAGTGCTTTTTGGACCAGGAATAGGCATGATTTGGGTCTGGGAAACCAGCACCTACAACAGGGGTGTTATACTCATTTTGCCCCAAAGGGCCACATTCTGTCTTCACTGAGGTCCACTTGTATTGGTTATATTCCTTGCTGgcaaaattggcaaaaaaatagTTCTCTATCCATCAAATTTTCTATGTGCCCAAACGGTCTAGCTTTCATGTCAATGACTGTTAACAAGCTGGACAGAGTTTAGAGACTATAAATTATGTCCACTATAATTTCTACGCAGTTTCGATTTGGTTTTAGGCATGTCAATTTAGATCGGaatattttttttcaattgacGCCCCTGATCTACAGTATAGCCGTGTAATGTCAAATTATTTGAATAGTTTGATTTCATTCATCTTAAAATGTTGATTAATATAGCAGCAACGGGCTCACTTTTACGAGAGACAATAACAATTGTTATCATACAAATTTGAAAATTGTGTGAGTAACCCATATGTAATTAAATTaatcccgagtggtgcagcggtctaaggcactgcatctcagtgcaagaggcatcactacagtccctgattcgtatccaggctgtatcacatctggccatgattgggagtcccatagggcggcgaacaattggcccagcatcgtccgggtttggccagggtaggccgtcattgtaaataagagtttgtttttaaccgacttgcctagctaaataaaggttaaaaaaaatatatataataattaaaGTAATAGAAACATTACATAACCAGGCaatattgttgttgtttcttGGGTGGAATTTTGTTGTTGATAGCCCAACATTCATTTGTGGCACCTGAGAGTGATTCATCTTACCCAACCTGGAGCTAAGGGAGTGTAGTATAGGCAATTTCCTCCTAAAAGGTAAAGCTTTTGAATGTCAAGCTGAACCGGCTAAATCTAAGTCAGGTGGGGATCCCTTGGCCTTTACAGTTGTTGCTGGATGACTTGGGCTAAGTCTTGAAAAAGCTGTTGTTTCACTAGACATGTGTGCATTAGTCTGCACTACAGATGTCAACAGCAGATACATCTGATATGAAAGAGAAATGCCACTATGCAATCTTTTCATTGCTTTTTAGATCTGTTAAATGGTCTTGCCTGGATTGTGGACTGTTCATTTGCTAACCATTTAATTGAATTAACTGattctgaatgaactgttttgatTGCAATACATATGCATATCAGTTCAACTGTTACTAGCAAAAGAAGCCCAGAGGATGAAAgcataaatgttaaataaaaaatataaatcagTGGCTTTTTAGCAGACTAAGGCAGCAGCATTTCCCTCCACCCTTACCCTGTCATACATTATCAACTTACAAAACTCACAGTACACTTTAATATCTAAAGATGGTCAACTCTGCCATGATAAAACTCAACTGGCATCCCATGTACTGCAAAGTGAAGTCAATCCAAAGCACACTTATCTATCCATCCAGCCATCATCTCACTGTGAATAGAAAACTTTTCCCCACTGAGCAACATAAGACCATGGCACTGTAGAGGAGACAGGCCAGCCGGCTCCCTGCCTCATCCCCAGTACCTGGTGTACAACAAGGCAACAGCCCACCTCTCTCCAAAGGTCAACACCCCTCCCTCGCACTGAAATACTGCTCTTCCCACACCCCACAAGCAACAGCAATATAGATTAACATTTGACTAGAAGCTGAGCGGTGGCAGATAAACCTCCAGCAGGTCCACGCCTCAGGGGGAATCTCCTTTATCACAGCCTAGGAGTAGGCTGACCCTCTTATCTATCCAACAGACTGACAGAGGGCCACCAGACTCTCCTTTGGAGACACACCAATGAAAACAAACAAATTGGCTGCTCTTCATGCAAAAGTCCCCCTGGGTGTGGCCTTTTGGCGAGGCGGGGCAGAGCGAGGGGGTCACCGGGAGGAGCTGCGCTCTTTGCTGACACAGTCGTCCTTGGTGCTGCTGTCTCCGTTGGATATCATACCGcacgtcttcctcttcttccgCCTGTGAGACATGGCGTCCCCCTCCGAGCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1345837 lncRNA upstream 29876 46390479 ~ 46442094 (+) True G1180133
TU1345865 lncRNA upstream 40748 46426920 ~ 46431222 (+) True G1180161
TU1345794 lncRNA upstream 123119 46347560 ~ 46348851 (+) True G1180093
TU1345769 lncRNA upstream 173519 46298211 ~ 46298451 (+) True G1180071
TU1345768 lncRNA upstream 174902 46296780 ~ 46297068 (+) True G1180070
TU1345930 lncRNA downstream 21391 46497470 ~ 46497708 (+) True G1180200
TU1345945 lncRNA downstream 48119 46524198 ~ 46525268 (+) True G1180205
TU1345956 lncRNA downstream 62229 46538308 ~ 46538685 (+) True G1180210
TU1345957 lncRNA downstream 62700 46538779 ~ 46539131 (+) True G1180211
TU1345970 lncRNA downstream 83948 46560027 ~ 46565394 (+) False LOC110486588
XM_036941296.1 mRNA upstream 135584 46302751 ~ 46336386 (+) False LOC110485193
XM_021558285.2 mRNA upstream 177502 46274324 ~ 46294468 (+) False LOC110486574
XM_021558286.2 mRNA upstream 177502 46282652 ~ 46294468 (+) True LOC110486574
XM_036941287.1 mRNA upstream 199600 46257363 ~ 46272370 (+) False LOC110486573
XM_021558296.2 mRNA downstream 7057 46483136 ~ 46485100 (+) False mettl23
XM_036941299.1 mRNA downstream 7273 46483352 ~ 46485100 (+) True mettl23
XM_021558294.2 mRNA downstream 12021 46488100 ~ 46493732 (+) False LOC110486580
XM_036941298.1 mRNA downstream 12411 46488490 ~ 46493623 (+) True LOC110486580
XM_021558298.2 mRNA downstream 17867 46493946 ~ 46509241 (+) True LOC110486584
TU1345717 other upstream 135692 46331718 ~ 46336278 (+) True LOC110485193
TU1345745 other upstream 198369 46239144 ~ 46273601 (+) True G1180047
TU1345697 other upstream 295408 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other upstream 295408 46174482 ~ 46176562 (+) True LOC118936304
TU1345036 other upstream 941842 45529436 ~ 45530128 (+) True LOC110485192
TU1347316 other downstream 898084 47374163 ~ 47374477 (+) True G1181472
TU1347462 other downstream 992037 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other downstream 992122 47468201 ~ 47470012 (+) True tmem100a
TU1347506 other downstream 1073200 47549279 ~ 47549548 (+) True G1181636
TU1347905 other downstream 1266282 47742361 ~ 47743064 (+) True G1181955

Expression Profile