RNA id: TU1346393


Basic Information

Item Value
RNA id TU1346393
length 543
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G1180598
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46494180 ~ 46494722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCCTCACTCGCCTGAGCCTTGCGGCGGAGCTGCATCAGCTGCCACAAGTCGTTGACCGGTGTTGTGGTTGAGGCAGTGCGACTCAGAAGATCGGTACCGCTAGGAAGCTTCTCCAGCGCGGCCATCTGTCTCTCGATCTGCCGAAGTTTGTCTTCCATGTGATGGTACGGGCTAGAGGACTTGGTCAGATGCGGGCCATGgggctcctgtggcgggccatCCTGCTCTCTCCAGCCGGTGGTCACATTTTGGATTTTCAGGTGTCCCAGGATAGCGTGGAGGAGGGTATGCAACGCATTGAAGTTGACAGCTCCAACTTCAGGTGTCCCGATCGACAGGTTCACCAAATCGAACAAACTAATGTCAGCTGACATTTTGTCTCACACTACTTTTGAGTTAGTTATTTAAAAGTATTTACGAGGGATATGAAAGATATATCTTCTGCCAATATTGCCATCTTATTTTGTAAAAATTCAACGCCAGAATGATTCAATTAAATAACAAGATTTTTTTTAATCGACAGGATCGAACGcaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1346375 lncRNA downstream 47867 46443255 ~ 46446313 (-) True G1180582
TU1346371 lncRNA downstream 50996 46437922 ~ 46443184 (-) True G1180578
TU1346277 lncRNA downstream 159637 46331726 ~ 46334543 (-) True G1180499
TU1346284 lncRNA downstream 191478 46302481 ~ 46302702 (-) True G1180506
TU1346282 lncRNA downstream 195913 46298028 ~ 46298267 (-) True G1180504
TU1346394 lncRNA upstream 3023 46497745 ~ 46497976 (-) True G1180599
TU1346396 lncRNA upstream 5839 46500561 ~ 46500790 (-) True G1180601
TU1346398 lncRNA upstream 8842 46503564 ~ 46504071 (-) False G1180602
TU1346403 lncRNA upstream 8842 46503564 ~ 46504071 (-) False G1180602
TU1346405 lncRNA upstream 8842 46503564 ~ 46504071 (-) False G1180602
XM_021558297.2 mRNA downstream 6298 46484771 ~ 46487882 (-) False LOC110486583
XR_005035570.1 mRNA downstream 6298 46484771 ~ 46487882 (-) False LOC110486583
XR_005035571.1 mRNA downstream 6298 46484771 ~ 46487882 (-) False LOC110486583
XR_005035572.1 mRNA downstream 6298 46484771 ~ 46487882 (-) False LOC110486583
XR_005035573.1 mRNA downstream 6298 46484771 ~ 46487882 (-) True LOC110486583
XM_021558299.2 mRNA upstream 15863 46510585 ~ 46535713 (-) False LOC110486586
XR_005035575.1 mRNA upstream 59230 46553952 ~ 46561085 (-) True LOC118938312
XM_021558310.2 mRNA upstream 333030 46827752 ~ 46914958 (-) False LOC110486590
XM_036941309.1 mRNA upstream 434781 46929503 ~ 47345921 (-) False LOC110485195
XM_036941308.1 mRNA upstream 445636 46940358 ~ 47041549 (-) False LOC110485195
TU1345282 other downstream 961518 45531858 ~ 45532662 (-) True G1179621
TU1345280 other downstream 964066 45529436 ~ 45530114 (-) True G1179619
TU1344653 other downstream 1300875 45183460 ~ 45193305 (-) True zgc:171844
TU1344629 other downstream 1407050 45085509 ~ 45087130 (-) True il-8
TU1344593 other downstream 1442156 45051576 ~ 45052024 (-) True G1178996
TU1346367 other upstream 18735 46513457 ~ 46535645 (-) True LOC110486586
TU1346918 other upstream 388706 46883428 ~ 46914902 (-) False LOC110486590
TU1346919 other upstream 388706 46883428 ~ 46915018 (-) True LOC110486590
TU1347403 other upstream 938074 47432796 ~ 47433397 (-) False LOC110486593
TU1347562 other upstream 967559 47462281 ~ 47466686 (-) False LOC110486594

Expression Profile