RNA id: TU1345957



Basic Information


Item Value
RNA id TU1345957
length 353
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1180211
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46538779 ~ 46539131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attctacccgttactcagtacttcgttgaagcacctttggcaacgattacagcatcgagtcttcttaggttaaacgctacaagcttggcacatctgtatttggggagtttctcccattcttctctgaagatcctgtcaagctctgtcaggttggatggggagcaatgctgcacagctattttcaggtctctccagaaatgtttgatcgggttcaagtccgggctttggctgggccactcaaggacattcagagatttgtcctgaagccactcctgtgttgtcttggctgtgtgcttagggagtaggttttcatcaaggatctctctgtactttgctccattcatctttgcctt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1345956 lncRNA upstream 94 46538308 ~ 46538685 (+) True G1180210
TU1345945 lncRNA upstream 13511 46524198 ~ 46525268 (+) True G1180205
TU1345930 lncRNA upstream 41071 46497470 ~ 46497708 (+) True G1180200
TU1345913 lncRNA upstream 62700 46471970 ~ 46476079 (+) False G1180193
TU1345970 lncRNA downstream 20896 46560027 ~ 46565394 (+) False LOC110486588
TU1345971 lncRNA downstream 22655 46561786 ~ 46565394 (+) False LOC110486588
TU1345972 lncRNA downstream 23503 46562634 ~ 46565394 (+) True LOC110486588
TU1346534 lncRNA downstream 139003 46678134 ~ 46713117 (+) True G1180716
TU1346562 lncRNA downstream 208135 46747266 ~ 46754851 (+) True G1180743
XM_021558298.2 mRNA upstream 29538 46493946 ~ 46509241 (+) True LOC110486584
XM_021558294.2 mRNA upstream 45047 46488100 ~ 46493732 (+) False LOC110486580
XM_036941298.1 mRNA upstream 45156 46488490 ~ 46493623 (+) True LOC110486580
XM_021558296.2 mRNA upstream 53679 46483136 ~ 46485100 (+) False mettl23
XM_021558300.2 mRNA downstream 3061 46542192 ~ 46547913 (+) True foxj1a
XM_021558302.2 mRNA downstream 20677 46559808 ~ 46565672 (+) False LOC110486588
XM_036941303.1 mRNA downstream 32111 46571242 ~ 46672347 (+) False LOC110486589
XM_021558307.2 mRNA downstream 42652 46581783 ~ 46672347 (+) True LOC110486589
XM_036942626.1 mRNA downstream 276876 46816007 ~ 46816999 (+) True LOC118938555
TU1345717 other upstream 202501 46331718 ~ 46336278 (+) True LOC110485193
TU1345745 other upstream 265178 46239144 ~ 46273601 (+) True G1180047
TU1345697 other upstream 362217 46174028 ~ 46176562 (+) False LOC118936304
TU1345699 other upstream 362217 46174482 ~ 46176562 (+) True LOC118936304
TU1345036 other upstream 1008651 45529436 ~ 45530128 (+) True LOC110485192
TU1347316 other downstream 835032 47374163 ~ 47374477 (+) True G1181472
TU1347462 other downstream 928985 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other downstream 929070 47468201 ~ 47470012 (+) True tmem100a
TU1347506 other downstream 1010148 47549279 ~ 47549548 (+) True G1181636
TU1347905 other downstream 1203230 47742361 ~ 47743064 (+) True G1181955

Expression Profile