RNA id: TU1347399


Basic Information

Item Value
RNA id TU1347399
length 1563
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G1181552
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47432395 ~ 47433957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTTCAGTGACATTTTATTATATGAATATAAAGAATAAATAGCAGTTCTCTTAATTTACATGATAAATCGTTGAAATAGGCTACCGATATTCAGCTGTATATCAGCTGCAAGATAACATAATCCACATGAAATCTGAGGTCGATAGATTAGTTTTCCATAATAGAAAACAACATGTTTATAAAACGGCACCTATGCGCCATTGATCTTCAATATAAATACAACAAATATAACCAATACTTTCCACAAATACGGTAGACTCTGGTTACACGTAATACTGACTTTTTACAATAACCTATATAATTGAATAGCACCTCATATACATAAAATACATTCCTACACTCGGTAGTGCATACAAAATTACAAAGTCATGATAATTTATACTTGAAAACAGTCATTTCAGTTCGAGCAGGCGCATTTGCATTCGGTTATCATCGGGTATTGAACTGGTATCCAAGTACATTTGAGGCCACCTTTCTTCTGTATACATCGCCATCTCAATATCGTAAAATGGGTCGAGTTTGCTGGTTTGCAGACCATCCCCTCTGGAACCGAACATGATCTTTTGCTTTGACAGTTTCCCACTCTCACATAACGTGGCCAAAATCTGCTGCCGAGGTCGTTCCATGTATAAATGACGGGACAGAACGAGAATGACCACAGCCACTGCTGCAGCCTCCGTTTAAGTTTGTTATTGGGTTTGTGCTTCTTGCCAAACTGTACGTCAAAATCCATTGCTTTGATTTCATTCGGCATCACTCCACTGGGCTTCTGTTGAATGTCCAAATCGTCAAGCTCATCGTTGCCAATGTATTTATCCTGTGGTGGTGTAATAGACATCAAGCGACTATCAAAGTCCCCCAATACACTTTTCAGTTCGGTTTCATTGAGGTCCCTCTCTTTTGGGTCAAAGACAGGATCTGGGTCCTCTTTTAATTCCACAAGTGGCAAACTGTCACTCGGGATAGGACGGAGGAGGTAATAATGCTGGCATAGCCCTTCTTCTATTATAAGTCCAAGGGACAACATCAGCAAGTACATTGCTACAAAATGCTGTGATTGATCCATGTCCGTTACGCACAATAAGACAGTATTATAGGATACAGCTAAACAGGTAGGCCTAGGCTACTCTGCTGCGTACAGTTGTGCCCGGTTCTTGCGGAGTGCGCACCGGCTTGAGTTACATCCAGCCAAACTTCACTTCTTGAGTGTTGGTGTCCTTAAAAGTCAGACTGCTTACTCCATAGCAAACGATACTTGATTGAAGATGGTAAAGATGAATAGTCTATTTCGTAAAAACAAATCTAGATATAGGCAGTGATTCCCTTTTACGCACGAATTCAATATATTGTATGAAATGGCTTTGTGACAGCATCAGTGGCATCAGCGGTTCTCATTCTTGTGCGCTTTGACGCGTGATTCCAGTTGCAAGTCCTCCCCTCTGAGGATCGGCATGGTGTTTCGTTTTCTTTTGCAGGACGCTGAGAGAGTAACCTGCTCCCTCTGATATATCCTCCACGGGTTGTGATGTAATTGATATATCCATCTGAATGTGGGTTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1347394 lncRNA upstream 1857 47430302 ~ 47430538 (+) True G1181547
TU1347386 lncRNA upstream 6095 47425987 ~ 47426300 (+) True G1181539
TU1347345 lncRNA upstream 22126 47409128 ~ 47410269 (+) True LOC110486592
TU1347347 lncRNA upstream 26023 47403943 ~ 47406372 (+) False LOC110486592
TU1347324 lncRNA upstream 52360 47379800 ~ 47380035 (+) True G1181480
TU1347420 lncRNA downstream 9434 47443391 ~ 47443708 (+) True G1181569
TU1347423 lncRNA downstream 11597 47445554 ~ 47445922 (+) True G1181572
TU1347432 lncRNA downstream 13035 47446992 ~ 47447613 (+) True G1181579
TU1347439 lncRNA downstream 24236 47458193 ~ 47458412 (+) True G1181586
TU1347440 lncRNA downstream 24506 47458463 ~ 47458695 (+) True G1181587
XM_036941313.1 mRNA upstream 22073 47403774 ~ 47410322 (+) False LOC110486592
XM_021558312.2 mRNA upstream 22073 47403805 ~ 47410322 (+) False LOC110486592
XM_021558311.2 mRNA upstream 31635 47395330 ~ 47400760 (+) True LOC110486591
XM_036939758.1 mRNA upstream 609417 46818538 ~ 46822978 (+) True LOC118938083
XM_036942626.1 mRNA upstream 615396 46816007 ~ 46816999 (+) True LOC118938555
XM_036941314.1 mRNA downstream 34055 47468012 ~ 47471205 (+) False tmem100a
XM_021558316.2 mRNA downstream 48281 47482238 ~ 47505989 (+) False LOC110486595
XM_021558317.2 mRNA downstream 54126 47488083 ~ 47504809 (+) False LOC110486595
XM_036941315.1 mRNA downstream 54185 47488142 ~ 47504809 (+) True LOC110486595
XM_021558334.2 mRNA downstream 396964 47830921 ~ 47832929 (+) False LOC110486605
TU1347316 other upstream 57918 47374163 ~ 47374477 (+) True G1181472
TU1345717 other upstream 1096117 46331718 ~ 46336278 (+) True LOC110485193
TU1345745 other upstream 1158794 46239144 ~ 46273601 (+) True G1180047
TU1345697 other upstream 1255833 46174028 ~ 46176562 (+) False LOC118936304
TU1347462 other downstream 34159 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other downstream 34244 47468201 ~ 47470012 (+) True tmem100a
TU1347506 other downstream 115322 47549279 ~ 47549548 (+) True G1181636
TU1347905 other downstream 308404 47742361 ~ 47743064 (+) True G1181955
TU1348132 other downstream 685656 48119613 ~ 48122575 (+) True G1182153

Expression Profile