RNA id: TU1347476


Basic Information

Item Value
RNA id TU1347476
length 3112
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1181606
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47508951 ~ 47512098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACACTATGAATTACAGATCGGGAGGCCAAGGCCTGAATATATGTTATGCATTCATTCCATGACAAACAAGACAGAATACTCCTTTCATTGTGTATCTATGTACCCTCTGTGAAACAGTCCATTGGTGTTGCCATTAATACAATGGTAATTAGTTAATTGTGTTTTAAATAAGTAAAAAGAAAATTGTAAATATATAGAATATTTGCTGCATTAGATCTGAACCTATTCAAGTGGTGATAATGACAATACGTCGCTGAGAGACTGAGGAACAGTCAGTGTATTCAAGGCACTGGAATAGACTCAGAATTATGGTTACTTTTTTCCATTCATGGGTGAGGTAGTGAAGTCACTCTACAGGGAGGTATGTGGGCAATGTGTGGACTGTTAATGGCTTTATCCTATTCTTTCATATGGTACAGAATAGCATGTTAAAGTACATGGACACACAGCTAACAAAACCCATATCTGTACGGATGGGCTATAGAAATGTGAATAAGGAAAATCACCTCCAGCCGTTTCTCTACAGCCAAAACATATCTACTCTCACCTTGGCTGGACCATGATCTGCAACAGGTAAGGAACACTACACTGTATTTGGTCAACTGTGAAAGTATTATAGCAGAATTAGAGAGATTTCAGTAAGCTATGCAGTGTCATTGAGAGTAATATCACTCAGGCAGTGGGCTTACTAGACTGCAAAGGTCGAACAAGCAGACAAACAGCAGCTACAGTAACCTGAAATGGCCCTCCCCTTCATTGTAACATCGTTCTAACTAGTGAGCATAGATGTCTCCAAATATTAGTCATATTAGTTTATATCAGAATATGACTAAAGGTAAACCTTTTCAGTTTTACCATCAAAGGACTCCGGTGACAGGAGTCTAATTGAGACACCTAGTGGTGACATCGGGGACAATCAATAGCAAGCAAGTATTGGCATCTCTTTTGCAATAGTGGGTCTCTACAGAAACCGATTAAAGATCATTCCATACATTCCGTCCTCCATACTCACAACTTTATTTCATGTTAACGTTGGGGAGACTCGAGCTTAAAGCACTACGATTCCATGACACAAGGAACTAAAGGTTACTGACGGCTAAATCTATAGTATATAACCAGGATACAGGAGTGTCTTTCCAATAATGCCCAACAGTATCCGTTACTGCTGCTGGATTTGGAGGAATCTCTGTAAAACTACCACATTATTATGGTTAAGATATCAAAACACTACTATATTGGTTCTTTGAGTAATGTGTTTGTATtctttaatataataataataataataataatattctgGATTCTGTGCCTTTAAAATACATAGCCAGTAATGTATAGGAAAAATACTGTACAAAAAAACACATATAGAATAGCTTTATATAAACATCTCTTATAACCAATGTATCATCTCTGTACTGAATATTTTGGTTTGTAGTAAACTAATTGTTTGGGATAACCACAGTACTGGACAACACCATTCAACTTTTTTCCCCCCAACATCTTTTACATTCATACAGCCATCTTACAGAAGGCAAACACATATCTACAAAAATACAGATATCTCTATTGATTATTAAAAGAACCACGCTTGTTAATCATGCTAAATAAAAAGGAAATCATTCAACCACTTTGCGATTAGCTTGAGGTTTGTGTTCTGAGAAATCATGCTGAAATATTCAAATAAAAATGCTGAGATGATAATAAGAACAACAATATCAACGACACAAATAGAAGTCATAATAATAACAATTCAATATTCCAAAAAATTAATCTGTCCTTAACAGAAAAGATACATAAATATCAGGCAGATTAGACTGAGGAACATTGCACCAGGGCAGATTGTGACACGTGTTAGAAGATTGGTGCAGAGAGGGTTAGCGGAGTTGTGGTTGTGGAACAGGCTGCAGCAAAGAGACCACTGAGCACAGGGTGGGAAATCTGTCCACCATCACCATGCTAGCTGGTGCAACTCCCAACAGAAAATGACCGTGCCGTGCAACGCGAGGCAAGAGGGTTGTGGGTTCTACTGGAGACCAAGAGGTGCTCTGATTGGGGAATCGGTGTGGGAGGAAAAACTTGGTAGCATTAATTAATATAGCTTTGGAAAAGATTATTGCTCAATGTGTGATAGAAAAGAATCGCTGGTTTTTCTTTTCAACTGTACAGTTATACTGAGGTTTGAGAGAGAGGTTAAGTGCTAACAAAGAAAATATTAAAATCACAAGAGTAGCTTATAGTCCTGATGTGATGAACTGATGGTACAGCGCCACAATAGAACAAAAATGGACACGAAAATGTATAATATTAACGGAAGTACAATAACAAAACGAATTGCAATACGAATGTATGGTACAAACCGTTTGAGAAAGGATGCTACAGGAAGGTACAGGACATAACAACAGACAGGAACAGGGTCTTAGGAAGGAGGAGAATCCCTCTGAAAACAGCACTGGAAGAACATAAGGATGGGGAGGGAGATACATTACAACAGCTCTCAGTCCTGATCACACGTATAAAACAGGTGAGAAAGGGGGAAAACAAACCTCATGGCATCATTTACAAAATGAACAGTGGAAGGAGGGGACAGGGTAGGGATCCGGAGAGTAGGTTGTTGGCTCAATAACACTCAAAGTGCCTTGTAGTACTTGAAAGAGGAAagtgtgtgtgcatactgtacatacatgttTGTACATGAAGGATGAGGGAGAAAACAAAAAGGAACAAACAATCAGATGCCAGTGACAGAATTCAAAATGATAGAATCTTATAGGATTATCATGTACAGGGGTGAGGGGCTGGTGTGTGTGGGGGCCAGTGCCACCAAAAGGGAGGCACATTGTCCTTCAATCTCTTGGGTgagggggtgagagggaaggGTGTGGCGCGGACGTTGGGGAGGTTTGGGGAGGTTCACAGGGGCCCATGACGAGCCTCATATTTGGCCACAATGTTTTTGGTGCGACCCAGTTCCTTCCTCAAGTCGGCCACCTCTGAGCGAAGTGCACCGTTCTCCTTCTCTAGGAAACCAGCCCGGATGGCAATTTGGTTCTCCTTCAGTCGCCTGGCATCTCGTGATCTTTTGGCTGCTACGTTGTTCTTTCTGCGTCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1347482 lncRNA upstream 1177 47507495 ~ 47507774 (+) True G1181612
TU1347481 lncRNA upstream 2225 47506271 ~ 47506726 (+) True G1181611
TU1347440 lncRNA upstream 50256 47458463 ~ 47458695 (+) True G1181587
TU1347439 lncRNA upstream 50539 47458193 ~ 47458412 (+) True G1181586
TU1347432 lncRNA upstream 61338 47446992 ~ 47447613 (+) True G1181579
TU1347485 lncRNA downstream 11126 47523224 ~ 47523453 (+) True G1181615
TU1347486 lncRNA downstream 11764 47523862 ~ 47524063 (+) True G1181616
TU1347498 lncRNA downstream 27329 47539427 ~ 47539748 (+) True G1181628
TU1347515 lncRNA downstream 45556 47557654 ~ 47557853 (+) True G1181645
TU1347523 lncRNA downstream 52933 47565031 ~ 47567116 (+) True G1181650
XM_021558316.2 mRNA upstream 2962 47482238 ~ 47505989 (+) False LOC110486595
XM_021558317.2 mRNA upstream 4142 47488083 ~ 47504809 (+) False LOC110486595
XM_036941315.1 mRNA upstream 4142 47488142 ~ 47504809 (+) True LOC110486595
XM_036941314.1 mRNA upstream 37746 47468012 ~ 47471205 (+) False tmem100a
XM_036941313.1 mRNA upstream 98629 47403774 ~ 47410322 (+) False LOC110486592
XM_021558334.2 mRNA downstream 318823 47830921 ~ 47832929 (+) False LOC110486605
XM_036941323.1 mRNA downstream 318823 47830921 ~ 47832931 (+) False LOC110486605
XM_021558333.2 mRNA downstream 321136 47833234 ~ 47836337 (+) True LOC110486603
LOC110485199 mRNA downstream 335314 47847412 ~ 47858242 (+) True LOC110485199
XM_021558335.2 mRNA downstream 363308 47875406 ~ 47912448 (+) False LOC110486607
TU1347462 other upstream 38939 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other upstream 38939 47468201 ~ 47470012 (+) True tmem100a
TU1347316 other upstream 134474 47374163 ~ 47374477 (+) True G1181472
TU1345717 other upstream 1172673 46331718 ~ 46336278 (+) True LOC110485193
TU1345745 other upstream 1235350 46239144 ~ 46273601 (+) True G1180047
TU1347506 other downstream 37181 47549279 ~ 47549548 (+) True G1181636
TU1347905 other downstream 230263 47742361 ~ 47743064 (+) True G1181955
TU1348132 other downstream 607515 48119613 ~ 48122575 (+) True G1182153
TU1348348 other downstream 1043916 48556014 ~ 48561624 (+) True G1182354
TU1348583 other downstream 1434651 48946749 ~ 48947969 (+) True G1182541

Expression Profile