RNA id: TU1348132


Basic Information

Item Value
RNA id TU1348132
length 1973
RNA type TUCP
GC content 0.36
exon number 3
gene id G1182153
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48119613 ~ 48122575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACAACTCTATTTAGCCTTCTTTCAATTGTCTATTAGTCTATTAATTGGGAGATTAATTTTTCTCTGTTTATTGTACTACACATTCTTGTGTCAAGAGACAATTTCTGTTTTTTCCTGAATTAATTCGTTTCATATTGCACGTGGGAGCTGCAGTAATGTGGAATGTATGTACTTTTTAGCTCAATTTGGTTGTCATACTCTTAATGATGAGGTTATTGTATGCAGTTTGCAATTTTCATAACTTCCTCATAGCTGTGTTCTGTCAGCTTGATAGACATGAGGGGGGTAAAGTTGTCAAAGGTGCCACAGAACAATCTAACCTGGTTCTAATCTGTATTAGCTAGACAAAGAACTAATACTTTTAAGTAACAGTCCTTTTGTGTACAGTATTAAccttgatgtccagaagctcAATAGGTCTTTATCACAGAGTCAATACAACAACATAATGAGGCCCTCAAGGCAGGAACTTCCCAGTAGAGCAAACCTCTAACTGTAAAACAGGCCACACAATTAACACTTTAAATTCCTAATTTGCATGTGTAGTTTTAACATCAGGTTGAGGAATGTATGATGACTTGATAATGACATTGTTCAACAGCCCTTaaatcaataaggaagagacagTGTAGCAATACACACTGAATTCAGAAGACAGGAAGGAAGTGCCTTTGAATAaccctcttagaaaaaaaggtgctatctagaacctaaaacggTTATACGGctgtcccataggagaaccctttgaataacccttttggttACTGATgtaaaaaccctttccacagagggttctaagtggaactcaaaagggttctcctttggggacagccaaagaacccttttggagtgTATGCAAGATTGGTGACAAGATTGGTTGAAAAATACCAAATGGATGCTGAGATGCTAGCTGGAGATTGGGATCCGTGGGTGTAATGTctgtaggagagaggagatggagagtagTTGGTGATAATGAGGGCCTCAATTAAAGAGAACATttacaaagacacagacagacagcagtcagTGAGGTCAATGCAGCCTTTTCCTGTTCTCCGTTCGTTAAACCTCTTCTCGTTTTGTAAAAGAGAAGTTCTGTTATGCTGCTTTTATCCTCCAGTTTTAGTTTTGAAGTTCCTCTTTAGTCTGTGGTGCACTCTGTCTGCACAGTCTCATGGTTAATAAAGGAACCAAAGCACAGCTGCCACCTGTAACACAGTCACCTTTACTCAactattatttactgtactgtactgaactatactgaactattatttactgtactgtactgtactgaactatatgcaactattatgtactgtactgtactgtactggactatactcaactattatttactgtactgtactgtactgaactatatgcaactattatttactgtactgtactgaactatatgcaactattatgtactgtactgtactgtactgaactatactcaactattatgtactgtactgtactgtactgaactatacacaactattatgtactgtactgtactgtactggactatactcaactattatgtactgtactgtactgtactgaactatatgcaactattatttactgtactgtactgtactggactatactcaactattatgtactgtactgtactgaacgaTATGCAACTaatatttactgtactgtactggactatactcaactattatgtactgtactgtactgaactatactcaactattatgtactgtactgtactggactatatgcaactattatttactgtactgaactatacgcaactattatgtactgtactgtactgtactggactatactcaactatgatgtactgtactgtactgtactgaactatatgcaactattatttactgtactgtactgtactggactatactcaactattatttactgtactgtactgtactatactatactcaactattatttac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348108 lncRNA upstream 11472 48107776 ~ 48108141 (+) True G1182130
TU1348103 lncRNA upstream 24679 48093008 ~ 48094934 (+) True LOC110486620
TU1348088 lncRNA upstream 87209 48032178 ~ 48032404 (+) True G1182110
TU1348085 lncRNA upstream 93839 48025184 ~ 48025774 (+) True G1182107
TU1348072 lncRNA upstream 116109 47999598 ~ 48003504 (+) True G1182094
TU1348163 lncRNA downstream 44490 48167065 ~ 48168051 (+) True G1182182
TU1348177 lncRNA downstream 65264 48187839 ~ 48188082 (+) True G1182196
TU1348185 lncRNA downstream 74233 48196808 ~ 48197030 (+) True G1182204
TU1348225 lncRNA downstream 148035 48270610 ~ 48270827 (+) True G1182240
TU1348262 lncRNA downstream 217131 48339706 ~ 48340100 (+) True G1182275
XM_036939759.1 mRNA upstream 17583 48094411 ~ 48102030 (+) False LOC110486620
XM_036941328.1 mRNA upstream 28297 48075981 ~ 48091316 (+) True LOC110486621
XR_002468287.2 mRNA upstream 82068 48033192 ~ 48037545 (+) True LOC110487551
XM_021558358.2 mRNA upstream 127606 47984789 ~ 47992007 (+) False LOC110486616
XM_021558360.2 mRNA upstream 127606 47985236 ~ 47992007 (+) True LOC110486616
XM_021558369.2 mRNA downstream 25824 48148399 ~ 48166866 (+) True sstr3
XM_021558371.2 mRNA downstream 74939 48197514 ~ 48204821 (+) True LOC110486624
XM_036941335.1 mRNA downstream 97404 48219979 ~ 48231937 (+) False LOC110486626
XM_036941337.1 mRNA downstream 97404 48219979 ~ 48231937 (+) False LOC110486626
XM_021558372.2 mRNA downstream 106401 48228976 ~ 48231937 (+) False LOC110486626
TU1347905 other upstream 376549 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 570065 47549279 ~ 47549548 (+) True G1181636
TU1347462 other upstream 649601 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other upstream 649601 47468201 ~ 47470012 (+) True tmem100a
TU1347316 other upstream 745136 47374163 ~ 47374477 (+) True G1181472
TU1348348 other downstream 433439 48556014 ~ 48561624 (+) True G1182354
TU1348583 other downstream 824174 48946749 ~ 48947969 (+) True G1182541
TU1348602 other downstream 855425 48978000 ~ 48981403 (+) True G1182555
TU1348645 other downstream 941210 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 992400 49114975 ~ 49118697 (+) True G1182629

Expression Profile