RNA id: TCONS_00044668


Basic Information

Item Value
RNA id TCONS_00044668
length 260
lncRNA type intronic
GC content 0.41
exon number 1
gene id XLOC_021573
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17254498 ~ 17254757 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATTTGACCTCTTTTGTGGCGTTTAATGTAATGGGCaatacaaatgtcttgatacctcaggctgttgatgttgccatccactctgcaaatttctcgcacacccccatgctgattataaccccaaaccatgatttttttccttcaccaaacttgacttatttctgtgagaatcttgagtccatgcgggttccaataggtcttctgcagtatttgtgatgattgggatgcagttcaaccgatgattcatctgaaaaatcta

Function

GO:

id name namespace
GO:0015801 aromatic amino acid transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0051179 localization biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0055085 transmembrane transport biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098793 presynapse cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0008509 anion transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015103 inorganic anion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044804 lncRNA upstream 43224 17146315 ~ 17211274 (+) False XLOC_021571
TCONS_00044802 lncRNA upstream 353262 16889152 ~ 16901236 (+) False XLOC_021567
TCONS_00044803 lncRNA upstream 353262 16889209 ~ 16901236 (+) False XLOC_021567
TCONS_00042815 lncRNA upstream 355708 16889209 ~ 16898790 (+) False XLOC_021567
TCONS_00042814 lncRNA upstream 355727 16889152 ~ 16898771 (+) False XLOC_021567
TCONS_00044805 lncRNA downstream 157768 17412525 ~ 17421436 (+) False XLOC_021576
TCONS_00044806 lncRNA downstream 218362 17473119 ~ 17477448 (+) True XLOC_021578
TCONS_00042840 lncRNA downstream 287962 17542719 ~ 17546078 (+) False XLOC_021580
TCONS_00044807 lncRNA downstream 292355 17547112 ~ 17550653 (+) True XLOC_021580
TCONS_00042841 lncRNA downstream 402079 17656836 ~ 17659102 (+) True XLOC_021581
TCONS_00042826 mRNA upstream 140406 17102960 ~ 17114092 (+) True XLOC_021570
TCONS_00042825 mRNA upstream 301262 16948049 ~ 16953236 (+) True XLOC_021569
TCONS_00042823 mRNA upstream 316095 16935494 ~ 16938403 (+) False XLOC_021568
TCONS_00042821 mRNA upstream 316968 16928506 ~ 16937530 (+) False XLOC_021568
TCONS_00042831 mRNA downstream 99397 17354154 ~ 17385249 (+) False XLOC_021574
TCONS_00042832 mRNA downstream 100194 17354951 ~ 17355613 (+) True XLOC_021574
TCONS_00042833 mRNA downstream 132568 17387325 ~ 17404011 (+) True XLOC_021575
TCONS_00042834 mRNA downstream 162782 17417539 ~ 17447163 (+) True XLOC_021576
TCONS_00042835 mRNA downstream 182797 17437554 ~ 17465232 (+) True XLOC_021577
TCONS_00042829 other upstream 42692 17187884 ~ 17211806 (+) True XLOC_021571
TCONS_00042828 other upstream 43224 17146561 ~ 17211274 (+) False XLOC_021571
TCONS_00042827 other upstream 107507 17146315 ~ 17146991 (+) False XLOC_021571
TCONS_00042824 other upstream 309057 16937629 ~ 16945441 (+) True XLOC_021568
TCONS_00042818 other upstream 353492 16898325 ~ 16901006 (+) False XLOC_021567
TCONS_00042836 other downstream 246557 17501314 ~ 17501428 (+) True XLOC_021579
TCONS_00042843 other downstream 528656 17783413 ~ 17783541 (+) True XLOC_021584
TCONS_00042853 other downstream 618769 17873526 ~ 17873598 (+) True XLOC_021588
TCONS_00042854 other downstream 619315 17874072 ~ 17874147 (+) True XLOC_021587
TCONS_00042869 other downstream 1034317 18289074 ~ 18289201 (+) True XLOC_021598

Expression Profile

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