RNA id: TU1348419



Basic Information


Item Value
RNA id TU1348419
length 393
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G1182416
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48662125 ~ 48662517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAATAAGACGTCACAGTCATCACTAACAAGCCTGTGTTTGGTTGGTTAACGGCTTGTCACTCTGTACCTTGCTACTTCCTCATCTCTACTTCCTGGCTTCACCGAATTAGCTCCTTTGGATGTATTGCTACAATAGGAATAGCTCTGCTGTGTCTAGCAAACACCTGATTGGCTCTCTGCTTGTGGTGATAACAACTGATTGGTTGTCTCAGTGAGTCTGGCTGAGTGACAGGGCCCAGGTAATTGTGAGGTACCTTTAGGGTGCGGCAAGGCAAGGTCTAGAGTAGTAGGACGAGATAGGAGGAGTCCATGGTGGTGTCTAGGAGTTTAGGGAGGGGGCAAGAGGGAGGGCAGGTGTAGTGGAGGGCCTTGGACACCCCAGGGTGGTCTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1348384 lncRNA upstream 39367 48621867 ~ 48622758 (+) True LOC110486647
TU1348354 lncRNA upstream 97318 48563817 ~ 48564807 (+) True G1182359
TU1348342 lncRNA upstream 125065 48536827 ~ 48537060 (+) True G1182350
TU1348336 lncRNA upstream 132692 48528914 ~ 48529433 (+) True G1182344
TU1348333 lncRNA upstream 141676 48516581 ~ 48520449 (+) True G1182342
TU1348425 lncRNA downstream 2700 48665217 ~ 48665595 (+) True G1182422
TU1348459 lncRNA downstream 62654 48725171 ~ 48725414 (+) True G1182449
TU1348470 lncRNA downstream 77311 48739828 ~ 48740040 (+) True G1182460
TU1348473 lncRNA downstream 80690 48743207 ~ 48763258 (+) True G1182463
TU1348525 lncRNA downstream 147943 48810460 ~ 48865525 (+) True G1182493
XM_036941351.1 mRNA upstream 39935 48598978 ~ 48622190 (+) False LOC110486647
XM_036941349.1 mRNA upstream 121638 48532510 ~ 48540487 (+) False LOC110486644
XM_021558403.2 mRNA upstream 121638 48532538 ~ 48540487 (+) True LOC110486644
XM_021558400.2 mRNA upstream 155917 48500511 ~ 48506208 (+) False ifi35
XM_021558398.2 mRNA upstream 155917 48500525 ~ 48506208 (+) True ifi35
XM_036941354.1 mRNA downstream 35686 48698203 ~ 48704379 (+) False LOC110486650
XM_021558410.2 mRNA downstream 38079 48700596 ~ 48704379 (+) False LOC110486650
XM_036941355.1 mRNA downstream 38437 48700954 ~ 48704379 (+) True LOC110486650
XM_036941359.1 mRNA downstream 85498 48748015 ~ 48796028 (+) False LOC110486653
XM_036941361.1 mRNA downstream 85498 48748015 ~ 48796028 (+) False LOC110486653
TU1348348 other upstream 100501 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 539550 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 919061 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 1112577 47549279 ~ 47549548 (+) True G1181636
TU1347459 other upstream 1192113 47468201 ~ 47470012 (+) True tmem100a
TU1348583 other downstream 284232 48946749 ~ 48947969 (+) True G1182541
TU1348602 other downstream 315483 48978000 ~ 48981403 (+) True G1182555
TU1348645 other downstream 401268 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 452458 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 538469 49200986 ~ 49202690 (+) True LOC110486671

Expression Profile