RNA id: TU1348459


Basic Information

Item Value
RNA id TU1348459
length 244
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1182449
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48725171 ~ 48725414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaacagtctttaaggagttcccacatatgctgagcacttgttggctgctgttCCTTCACTctatggtccaactcatcccaaaccattccAATTGGGTGgagttcgggtgattgtggaggccaggtcatctgatgcagccctccatcactctccttcttggtcaaatagcccttacacagcctggaggtgtgttttgggtaatTTTCCTATTTTCCTatccactaagcccaaaccagatgggat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348425 lncRNA upstream 59576 48665217 ~ 48665595 (+) True G1182422
TU1348419 lncRNA upstream 62654 48662125 ~ 48662517 (+) True G1182416
TU1348384 lncRNA upstream 102413 48621867 ~ 48622758 (+) True LOC110486647
TU1348354 lncRNA upstream 160364 48563817 ~ 48564807 (+) True G1182359
TU1348342 lncRNA upstream 188111 48536827 ~ 48537060 (+) True G1182350
TU1348470 lncRNA downstream 14414 48739828 ~ 48740040 (+) True G1182460
TU1348473 lncRNA downstream 17793 48743207 ~ 48763258 (+) True G1182463
TU1348525 lncRNA downstream 85046 48810460 ~ 48865525 (+) True G1182493
TU1348532 lncRNA downstream 91803 48817217 ~ 48820321 (+) True G1182498
TU1348561 lncRNA downstream 149656 48875070 ~ 48875345 (+) True G1182521
XM_036941354.1 mRNA upstream 20792 48698203 ~ 48704379 (+) False LOC110486650
XM_021558410.2 mRNA upstream 20792 48700596 ~ 48704379 (+) False LOC110486650
XM_036941355.1 mRNA upstream 20792 48700954 ~ 48704379 (+) True LOC110486650
XM_036941351.1 mRNA upstream 102981 48598978 ~ 48622190 (+) False LOC110486647
XM_036941349.1 mRNA upstream 184684 48532510 ~ 48540487 (+) False LOC110486644
XM_036941359.1 mRNA downstream 22601 48748015 ~ 48796028 (+) False LOC110486653
XM_036941361.1 mRNA downstream 22601 48748015 ~ 48796028 (+) False LOC110486653
XM_036941364.1 mRNA downstream 22601 48748015 ~ 48796028 (+) False LOC110486653
XM_036941366.1 mRNA downstream 22601 48748015 ~ 48796028 (+) False LOC110486653
XM_036941372.1 mRNA downstream 22607 48748021 ~ 48796028 (+) False LOC110486653
TU1348348 other upstream 163547 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 602596 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 982107 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 1175623 47549279 ~ 47549548 (+) True G1181636
TU1347459 other upstream 1255159 47468201 ~ 47470012 (+) True tmem100a
TU1348583 other downstream 221335 48946749 ~ 48947969 (+) True G1182541
TU1348602 other downstream 252586 48978000 ~ 48981403 (+) True G1182555
TU1348645 other downstream 338371 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 389561 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 475572 49200986 ~ 49202690 (+) True LOC110486671

Expression Profile