RNA id: TCONS_00042834


Basic Information

Item Value
RNA id TCONS_00042834
length 159
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_021576
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17412525 ~ 17447163 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACCACTGTGAATGCCCCCGTGTGTCTGCTCGCTCGGAATGAGTTTTATCGGAttaaagGGCCTGCCATCTCATCCTCATCATCTATTGGTGCTAAAAgctACACGGGGAAGATTATTGTACATCACAtaagattacccaataaattGTCTGGACAT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0032501 multicellular organismal process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000182605

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044668 lncRNA upstream 162782 17254498 ~ 17254757 (+) True XLOC_021573
TCONS_00044804 lncRNA upstream 206265 17146315 ~ 17211274 (+) False XLOC_021571
TCONS_00044803 lncRNA upstream 516303 16889209 ~ 16901236 (+) False XLOC_021567
TCONS_00042815 lncRNA upstream 518749 16889209 ~ 16898790 (+) False XLOC_021567
TCONS_00044806 lncRNA downstream 25956 17473119 ~ 17477448 (+) True XLOC_021578
TCONS_00042840 lncRNA downstream 95556 17542719 ~ 17546078 (+) False XLOC_021580
TCONS_00044807 lncRNA downstream 99949 17547112 ~ 17550653 (+) True XLOC_021580
TCONS_00042841 lncRNA downstream 209673 17656836 ~ 17659102 (+) True XLOC_021581
TCONS_00044808 lncRNA downstream 323261 17770424 ~ 17776345 (+) True XLOC_021582
TCONS_00042833 mRNA upstream 13528 17387325 ~ 17404011 (+) True XLOC_021575
TCONS_00042831 mRNA upstream 32290 17354154 ~ 17385249 (+) False XLOC_021574
TCONS_00042832 mRNA upstream 61926 17354951 ~ 17355613 (+) True XLOC_021574
TCONS_00042830 mRNA upstream 71284 17220986 ~ 17346255 (+) True XLOC_021572
TCONS_00042826 mRNA upstream 303447 17102960 ~ 17114092 (+) True XLOC_021570
TCONS_00042837 mRNA downstream 62631 17509794 ~ 17520775 (+) False XLOC_021580
TCONS_00042838 mRNA downstream 64874 17512037 ~ 17523384 (+) False XLOC_021580
TCONS_00042839 mRNA downstream 75704 17522867 ~ 17549145 (+) False XLOC_021580
TCONS_00042844 mRNA downstream 353554 17800717 ~ 17815253 (+) False XLOC_021585
TCONS_00042845 mRNA downstream 353676 17800839 ~ 17814778 (+) True XLOC_021585
TCONS_00042829 other upstream 205733 17187884 ~ 17211806 (+) True XLOC_021571
TCONS_00042828 other upstream 206265 17146561 ~ 17211274 (+) False XLOC_021571
TCONS_00042827 other upstream 270548 17146315 ~ 17146991 (+) False XLOC_021571
TCONS_00042824 other upstream 472098 16937629 ~ 16945441 (+) True XLOC_021568
TCONS_00042818 other upstream 516533 16898325 ~ 16901006 (+) False XLOC_021567
TCONS_00042836 other downstream 54151 17501314 ~ 17501428 (+) True XLOC_021579
TCONS_00042843 other downstream 336250 17783413 ~ 17783541 (+) True XLOC_021584
TCONS_00042853 other downstream 426363 17873526 ~ 17873598 (+) True XLOC_021588
TCONS_00042854 other downstream 426909 17874072 ~ 17874147 (+) True XLOC_021587
TCONS_00042869 other downstream 841911 18289074 ~ 18289201 (+) True XLOC_021598