RNA id: TU1348532


Basic Information

Item Value
RNA id TU1348532
length 3081
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G1182498
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48817217 ~ 48820321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGGCACATGAACAGAGGTTGAATGGTCTGAAAAAGATTTGGCACGGAACCTTTAAGCAGAACATATGACCCCTCCTTCACACACACGTGACATGTTTCCAGTGTTAATACACACACTCATGGTTAGAACAGGCTAGAACAGAGTCATAAGAAACAATCACGAGAACAACCATAGTCAATATTGCAGAAGAAAAGAAGAAGCGAACCAAAAGAGCAGATGGAGTCTATGTTTAATTAAACAGAGGGAAGGAAATATCTCAAGTGTTGGCTTGTTGTAGTGTTAATTTTCCCTTTTTTCctgagagagggttagggttgaagtaatgcgcgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactcagagCAAGGCAGGGACAGGCAGGGACCGATGCTTTATCTACATTTCTGAGGGACAGGGTGAGAAAAGGGAGACAAGGAGAAAGGGGGTAAGTCAGCTATGCTCGTTTGCTTCCCGTGAGTGAGGTTTGGAGTCATCGGCCCCTCCAGCACTGGTTGACATATAAGCACCGCAGcgttccccctcatgtccttctctcttcttcacacacacacacacacacaacctcttaTACCCAAGCACACCGCACACACTCATAAACACACAACTGTGCACAAGCACATGGGAATGCACGCACACAtatagacaggcacacacactcatacacacacagatatacacaaatacagtgtatatacacacagatacaGTGTAGCATACCCAGGCCAGTACCCAGACAGGATAAGGAGTGACAGGAAGTCTCAGTGTCCTCTGACAGTCAACCTCATCGCTCATTCCTcctgcttctctgtctctctgtctctctgtctgtgagaGGGAGTTGTCTGCCTGAGGGGGAAAGGGTTGTTCTGTGGTGACTGAGGTATACACTGTGGGTGACCATGTTGGATATATGAGGTAAAGCACAGGAagttgctgaggggaggacgactcataataatggctggaacggagcaaatggaatgtcatcaaacacatggaaaccacgtgtttgatgtatttgataccaattccctgattccactccagccattgcCATGAGCCAGTCCTCCCCATTTAAGatgccaccaatctcctgtgagGTAAATGTATGGTAAACACGAGGTAACACCAGTAACACCAGGGTTTGAGCGCATTAGAAGCCACACTCTGCCAGCTGGTGGCTGATGGTGTGGAGCGGGGTGAAAATAAAGTATCAAAGGGGGGGTGTCAGAGACGGAGGTTGAAGGAGACCCGCCTGAATAAATACATCAGCACCAATGAGGACAGCAGCACACCTCCAAAACTGACAGGGGGAGACAACaaggttttaaaaaaatgtaaagttaAAAGACAAAATCAATATCTCCAGTTAAAGGGCCTTATAAATTCATGTTGAAAGACCCCAAACACCAAATGACCTCAGGTTGCATCACTGATGATGTGTCCATGAGCATCAATAGATGTATTCATTCAATATAcgcattgattcttgaagaatctAACTTCTAAATGCCTCATGGGCTTAGTTCAACTCCAAACTAttagcttgttttactccaatgtttgtaaacaaagtaaatgtaaacaaacactgtattaaAACATAGTTAGAGCTAgagtgttgatatcatggatgcgAGGTCAgtacttgcatccatagctctgtcaatgaacttGAGAGTGGTTATATtgcctatgaatttgagagtggttacattgcctatgaatttgagagtgattacattgcctatgaatttgagagtggttacattgcctatgaatttgagagtggttacattgcctatgaatttgagagtggttacattgcctatgaatttgagagtggttacattgcctatgaatttgagagtggttacattgcCCAATCCCTCAGCCTTTTACCGAAACAATGGCGGGGAGGTGCTTTGTTAGAACAGAGGGTTGCCCCATTAAACTTGATTTCATATTGATGAATGTTTACTGCTACTCTGCTTCTCCCTTTCAAGTTGGTTCATTGTATTGATTCTGGAGGTAATATAATAGAACAATTCTGTGCCATTTAGCAAACGCTTTTAAGCGACTTAGTCAGGTCAGCCCTCAGAGCCCTGACTCCTCCTCCAGCTCTACTCTGCTGCCTGGCTGACTAGGGAGGTTCTGACCACCAGTGTTGGGGTCTGGATTGAACTTGACCCTGCATCACACTGGGTTGCTGGCGCCGCTCTATCCCCACACAAGGAAACGACTATCAACACATGATCCCCTGGCTGCGTATTCCTCTCACACCGTGGTTATTCTACACTGGCCCTCCATAGGGTGCAGTGGAGCAGACCGCCATTTGCACTTCAAAGCTTTCGAATGTGCGCTATGGCCGCCGCCCAGCTTCAAACAAACATCAGACACAGTAGAGTGTGAATATGATGGCGAGCCAAGGCGCCCATAAACTGTAAATCTGTGTGCTGTGTtgctgtggaggagaggagagcagagtagcAGAGGGGGGTGAATGTGTGTTGCTGTTGGGAGACTTGACTGGGAGCTTgtcctctgagaggagaggagcacagCTGCTGGCTCAGCACATCCTTTAATAGTCGCCGATGGTTCAGGACATTCCGATATGATTCCAACAACTCCACAACATCCCTGATAAACATGGAAGGTTCACGAGCAATGCAGGGGACGTCAGAGTGTTCTAGAACATCTGTCATAAACGGTTCCAATTATCAAGTCTGGAACACTGGATTAGAGGAGTCAATTTCTCTCATCTAGAACTTCCAAAAACAAGGATCTTAATGTTCTAGAACCTTCAGAATGAAGTGTTCCATAATGTTCCTTCTCAGAACAGGGTGTTCAAAGACATGAAGAACAGTGTCCCAGCTGAATACCACAGCTACGGTGGGCTCAGGAAGACCTAGCCTGATGACCAGATCCATTATGCTGGATCCCACAATTAGAGGCTTTTCAGCATGTCCCATTAGAGTAACAGTGATGGCTGCTCCCTGTTAATGGAGAATTTAGCTTTTTTGCAACCAAATCTCTATTTTtgatgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348473 lncRNA upstream 53959 48743207 ~ 48763258 (+) True G1182463
TU1348470 lncRNA upstream 77177 48739828 ~ 48740040 (+) True G1182460
TU1348459 lncRNA upstream 91803 48725171 ~ 48725414 (+) True G1182449
TU1348425 lncRNA upstream 151622 48665217 ~ 48665595 (+) True G1182422
TU1348419 lncRNA upstream 154700 48662125 ~ 48662517 (+) True G1182416
TU1348561 lncRNA downstream 54749 48875070 ~ 48875345 (+) True G1182521
TU1348512 lncRNA downstream 55353 48875674 ~ 48879245 (+) False G1182492
TU1348515 lncRNA downstream 55353 48875674 ~ 48879245 (+) False G1182492
TU1348516 lncRNA downstream 55353 48875674 ~ 48879245 (+) False G1182492
TU1348517 lncRNA downstream 55353 48875674 ~ 48879245 (+) False G1182492
XM_036941356.1 mRNA upstream 21189 48762605 ~ 48796028 (+) False LOC110486653
XM_036941357.1 mRNA upstream 21189 48762605 ~ 48796028 (+) False LOC110486653
XM_036941358.1 mRNA upstream 21189 48762606 ~ 48796028 (+) False LOC110486653
XM_036941360.1 mRNA upstream 21189 48762606 ~ 48796028 (+) True LOC110486653
XM_036941373.1 mRNA upstream 23730 48762602 ~ 48793487 (+) False LOC110486653
XR_005035576.1 mRNA downstream 137456 48957777 ~ 48959202 (+) True LOC110486658
XR_005035844.1 mRNA downstream 137868 48958189 ~ 48958276 (+) True LOC118938637
XR_005035843.1 mRNA downstream 138101 48958422 ~ 48958510 (+) True LOC118938636
XR_005035842.1 mRNA downstream 138357 48958678 ~ 48958765 (+) True LOC118938635
XM_021558431.2 mRNA downstream 279686 49100007 ~ 49104036 (+) True LOC110486662
TU1348348 other upstream 255593 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 694642 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 1074153 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 1267669 47549279 ~ 47549548 (+) True G1181636
TU1347459 other upstream 1347205 47468201 ~ 47470012 (+) True tmem100a
TU1348583 other downstream 126428 48946749 ~ 48947969 (+) True G1182541
TU1348602 other downstream 157679 48978000 ~ 48981403 (+) True G1182555
TU1348645 other downstream 243464 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 294654 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 380665 49200986 ~ 49202690 (+) True LOC110486671

Expression Profile