RNA id: TU1348519


Basic Information

Item Value
RNA id TU1348519
length 3080
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G1182492
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48875674 ~ 48879245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggCTGGATGATACATATCCTTTATTTCCATGATCATTGCTTCAGCCACACCATCTCCCACACATTCACCTACATCATCttcctcttcaccctcctcccccTAGCTCTCTGGCTGAAACAAGCATTTCAGACTGAATGTCTCACTTCTGTTCAAATGTCTATTTATCCGTTTAACCCATATAAAAAGTAAACTTCTGaagaaattatatattttttaaagaatcaAAAATTAAATCAGGAATAACTATTTAATGAAGATATACAGGATAAACAATGTTATTTATCATCATTGTTTTGATTACAGAGAGAACGATTGCTAGGTCTCCATTTCCGTCATTAGTAGTATTAATATCAAGTTCATTGTCAGGTTTTGCTTAAAGCATCACATATCTAATTTTCATTGCATCAAGTTGACATCATTCATGTTAATATAAGCATGCACACATGTTTCCCAATGTCCATTCAGAACTGCACtaacactgagagagacagaggagagaggagtcctacacacagagagagcgggcaagatggagggaggcagagagagggggtgaatggctgtgtggagagagagggaagtggggAAAAGGGAGTTTTCAGAAATAGAGTGGGAGAACAAGCAatcaaagagagcgagagacaggtatagaaagagaaagggaaaagagaaaggtatattgagagagagagagagagagagagagagtgagagagagagaggcaggcaggcatagAAAGAGATAAAGGGGAAAGAGAAAggtatattgagagagagagagagagagagaggcaggcaggcaggcatagaAAGAGATAAAGGAGCAAGAGAAAggtatattgagagagagagagaggcaggcaggcatagAAAGAGAAAgGAGCAAGAGAAAggtatatttagagagagagagagaggtggagggtaaTACTGAGAGCACACTAGCAACCTCCAGTGCTGAGTGCTAACACCACAGTGTTATGGGGCAGAGAATCATGTGGACTgcgagggatagagacagagccTGGAGATAGGCCAATGGATCAATACTATAGTATCTACTTATACAGGCAGATCAATGACCTCCCAGAACAACCTGAGCAGACATACAGTTCCAGATGGAAAACTTCTGGCTATGATGTGGGATATACGGCTTTAATCAGTGTACATACCAAGCATACCAGTAAGCATCCCTGCACTTCCTTGGCCTGAAGTTGGAATAGTAACTGGATCCCCCTGAATGCGTTTAAGGGGAAATGGCAGCCATAGCATTAGTAGTGCTAACTGTTAGTTGAGGTTATAGTAGCAGAAGTGGTGGTAGACATGGTTCTCTCATGGCAGTAGCCACATGGTGCTTAAAGAGGAAGTGCAGAGCGTAAACAGGGGGTCATCGTATTTCACTAAAGATAAAGGGCATGActaccccctctctgtctccccgttTGGAGGGACTGCTAGGGGACATAAAAGAGTCATTACTCAGCCCAAAATTCTACCTCAAGTAATCAAAACGTATCTAACATCACGGTGCCAACTGGTTCCCCtcagacacacagtacacattTACTAAAAGAAGTACACAACCAACACAGTTACTTAGATCAGGCAGGGGGGGGGCACTTTTGAGTGACGGACAGCTGATCTGGGAaacaacacacacaatacactctAATCTCTGTGAGAGACCGACTGTTCATCAGGGATCCCACTCCCCACCAAGTGCAATGGGTCCTAGTTTCCCACTCCCCAACAAGTGCAATGGGTCCTACACACAAATGGTTCCTCTAAGACACACAGGACAGAAGACACATTTTGTTCAAAGACAGGAGTTTCAGTCTGTGGATGCTAGGAATGGTGTGGGGCCGTGAGGACAGGTAGAAGATAGGGACGTCATGAGCACAGAAACGTGTCACACAGAAGgtcacagtgacacacacacaaacatacaggcatacacacacagacgcacacaaatacaaaacacacacacaaacacagaaatacacacaaatCAAAGCAACACAAATGTGTGTGTCCTTCTAATGTTGTCGTCCAGTCGGAGACATGATGGACTGCAGACAATTTTTATATTTTCAAATTAAATAATGTCTTTCCGCAAAAACAAAATCTTGGAATGATAGAAAAATTCGATATAATGGTGAAATCCTTCCCTGTAGGATACATTTCCAGTAAGTGCACTCCAAGCCGAGCAGGTCCGTCCTCATCACAGTTCCCCTGTAGAGTCCTCTGGGGTAAAGTCTGCCAGTATGTCCAAACAGGGGAACACTATTCCTGTAACATCCCAAGGCGCTCAAATAGTTCAGGTCTTCAAGTACTCACGATCACATCCTTAGTGGATCGTAAAAAAATGCTATGGATAAATTCCTTTCTGGATGATTATATTACACAAACCCCCAAAACCAaacaaatagaaaaataaaagcAAATTCACATTAATGAGCACCATGAAGAAGGTGACAAAATAATGAGGCGAAAGGACACATTTCAAGGTTACGTAACATGCTTCAGCAGATGGGTTCATCCACATTTCTCCCTCCCCTGACATCAATAATAACGACCAGCAAAGGTTCCTTCCTCCAGCTAAAAGAAGCCAGAAAAGCCCAGATCCAGAGGGTAGGCCCAAACCACTAGAGTCTCCACAACTGATGTTTGTCCTGCTGGAAACACTACATGGATGTTTCCTAACTCCTACACTTGTATAGTAATGGCCTAAAGTAAAGCATTGACACATGTCTTTTGAAGTCCATACAGAGCAGAAACCTTAGGCCCAGGTTTGATTGGAGGGAGAAATGTGCATCATCACACTCCTCCTGGATGAATTACTGGCACTAACCtgaagcactgtgtgtgtgtgtgtgtgtgtgtgtcagcgttcTAAGTGTTGCTTGTATAGAATGTAGATTCTGTTTTCCTTTGCTTCGTTGCGACAGGACAGGAGTTGGAATATTCAGCAGTAGCAGTAGAATAGCAGTCGATgtgtctcctcatctctctttgtTTGATGGAGATAATTATTCACAGATGAGCAGAAAGAAAGGAAAGTCTGGAACTGGAAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348561 lncRNA upstream 329 48875070 ~ 48875345 (+) True G1182521
TU1348525 lncRNA upstream 10149 48810460 ~ 48865525 (+) True G1182493
TU1348532 lncRNA upstream 55353 48817217 ~ 48820321 (+) True G1182498
TU1348473 lncRNA upstream 112416 48743207 ~ 48763258 (+) True G1182463
TU1348470 lncRNA upstream 135634 48739828 ~ 48740040 (+) True G1182460
TU1348582 lncRNA downstream 65162 48944407 ~ 48944967 (+) True G1182540
TU1348584 lncRNA downstream 70643 48949888 ~ 48956559 (+) True G1182542
TU1348590 lncRNA downstream 78550 48957795 ~ 48959202 (+) False G1182547
TU1348591 lncRNA downstream 78550 48957795 ~ 48959202 (+) False G1182547
TU1348592 lncRNA downstream 78550 48957795 ~ 48959202 (+) False G1182547
XM_036941356.1 mRNA upstream 79646 48762605 ~ 48796028 (+) False LOC110486653
XM_036941357.1 mRNA upstream 79646 48762605 ~ 48796028 (+) False LOC110486653
XM_036941358.1 mRNA upstream 79646 48762606 ~ 48796028 (+) False LOC110486653
XM_036941360.1 mRNA upstream 79646 48762606 ~ 48796028 (+) True LOC110486653
XM_036941373.1 mRNA upstream 82187 48762602 ~ 48793487 (+) False LOC110486653
XR_005035576.1 mRNA downstream 78532 48957777 ~ 48959202 (+) True LOC110486658
XR_005035844.1 mRNA downstream 78944 48958189 ~ 48958276 (+) True LOC118938637
XR_005035843.1 mRNA downstream 79177 48958422 ~ 48958510 (+) True LOC118938636
XR_005035842.1 mRNA downstream 79433 48958678 ~ 48958765 (+) True LOC118938635
XM_021558431.2 mRNA downstream 220762 49100007 ~ 49104036 (+) True LOC110486662
TU1348348 other upstream 314050 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 753099 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 1132610 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 1326126 47549279 ~ 47549548 (+) True G1181636
TU1347459 other upstream 1405662 47468201 ~ 47470012 (+) True tmem100a
TU1348583 other downstream 67504 48946749 ~ 48947969 (+) True G1182541
TU1348602 other downstream 98755 48978000 ~ 48981403 (+) True G1182555
TU1348645 other downstream 184540 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 235730 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 321741 49200986 ~ 49202690 (+) True LOC110486671

Expression Profile